audit and remediate mosaic framework path inconsistencies

rails/bootstrap/agent-lint.sh

@@ -11,7 +11,7 @@
 # Checks per project:
 #   1. Has CLAUDE.md?
 #   2. Has AGENTS.md?
-#   3. CLAUDE.md references agent-guides (conditional loading)?
+#   3. CLAUDE.md references conditional context/guides?
 #   4. CLAUDE.md has quality gates?
 #   5. For monorepos: sub-directories have AGENTS.md?
 
@@ -102,10 +102,10 @@ check_agents_md() {
   [[ -f "$1/AGENTS.md" ]]
 }
 
-# Check conditional loading (references agent-guides)
+# Check conditional loading/context (references guides or conditional section)
 check_conditional_loading() {
   local claude_md="$1/CLAUDE.md"
-  [[ -f "$claude_md" ]] && grep -qi "agent-guides\|conditional.*loading\|conditional.*documentation" "$claude_md" 2>/dev/null
+  [[ -f "$claude_md" ]] && grep -qi "agent-guides\|~/.mosaic/guides\|conditional.*loading\|conditional.*documentation\|conditional.*context" "$claude_md" 2>/dev/null
 }
 
 # Check quality gates
@@ -205,7 +205,7 @@ JSONEOF
   if $VERBOSE && ! $JSON_OUTPUT; then
     [[ "$has_claude" == "MISS" ]] && echo "    ${DIM}  CLAUDE.md missing${NC}"
     [[ "$has_agents" == "MISS" ]] && echo "    ${DIM}  AGENTS.md missing${NC}"
-    [[ "$has_guides" == "MISS" ]] && echo "    ${DIM}  No conditional loading (agent-guides not referenced)${NC}"
+    [[ "$has_guides" == "MISS" ]] && echo "    ${DIM}  No conditional context/loading section detected${NC}"
     [[ "$has_quality" == "MISS" ]] && echo "    ${DIM}  No quality gates section${NC}"
     if [[ "$mono_status" == MISS:* ]]; then
       echo "    ${DIM}  Monorepo sub-AGENTS.md missing: ${mono_status#MISS:}${NC}"

rails/bootstrap/agent-upgrade.sh

@@ -135,7 +135,7 @@ inject_fragment() {
   # Determine detection pattern for this fragment
   local detect_pattern
   case "$fragment_name" in
-    conditional-loading) detect_pattern="agent-guides\|Conditional.*Loading\|Conditional.*Documentation" ;;
+    conditional-loading) detect_pattern="agent-guides\|~/.mosaic/guides\|Conditional.*Loading\|Conditional.*Documentation\|Conditional.*Context" ;;
     commit-format) detect_pattern="<type>.*#issue\|Types:.*feat.*fix" ;;
     secrets) detect_pattern="NEVER hardcode secrets\|\.env.example.*committed" ;;
     multi-agent) detect_pattern="Multi-Agent Coordination\|pull --rebase.*before" ;;

rails/qa/qa-hook-handler.sh

@@ -1,6 +1,6 @@
 #!/bin/bash
 # Universal QA hook handler with robust error handling
-# Location: ~/.mosaic/rails/qa-hook-handler.sh
+# Location: ~/.mosaic/rails/qa/qa-hook-handler.sh
 
 # Don't exit on unset variables initially to handle missing params gracefully
 set -eo pipefail
@@ -194,4 +194,4 @@ claude -p "Use Task tool to launch universal-qa-agent for report: $REPORT_PATH"
 \`\`\`
 EOF
 
-echo "[$(date '+%Y-%m-%d %H:%M:%S')] Created report template at: $REPORT_PATH" | tee -a "$LOG_FILE"
+echo "[$(date '+%Y-%m-%d %H:%M:%S')] Created report template at: $REPORT_PATH" | tee -a "$LOG_FILE"

rails/qa/qa-hook-stdin.sh

@@ -1,6 +1,6 @@
 #!/bin/bash
 # QA Hook handler that reads from stdin
-# Location: ~/.mosaic/rails/qa-hook-stdin.sh
+# Location: ~/.mosaic/rails/qa/qa-hook-stdin.sh
 
 set -eo pipefail
 
@@ -51,9 +51,9 @@ if ! [[ "$FILE_PATH" =~ \.(ts|tsx|js|jsx|mjs|cjs)$ ]]; then
 fi
 
 # Call the main QA handler with extracted parameters
-if [ -f ~/.mosaic/rails/qa-hook-handler.sh ]; then
+if [ -f ~/.mosaic/rails/qa/qa-hook-handler.sh ]; then
     echo "[$(date '+%Y-%m-%d %H:%M:%S')] Calling QA handler for $FILE_PATH" >> "$LOG_FILE"
-    ~/.mosaic/rails/qa-hook-handler.sh "$TOOL_NAME" "$FILE_PATH" 2>&1 | tee -a "$LOG_FILE"
+    ~/.mosaic/rails/qa/qa-hook-handler.sh "$TOOL_NAME" "$FILE_PATH" 2>&1 | tee -a "$LOG_FILE"
 else
     echo "[$(date '+%Y-%m-%d %H:%M:%S')] [ERROR] QA handler script not found" >> "$LOG_FILE"
-fi
+fi

rails/qa/qa-hook-wrapper.sh

@@ -13,7 +13,7 @@ echo "[$(date '+%Y-%m-%d %H:%M:%S')] Hook wrapper called: tool=$TOOL_NAME file=$
 
 # Call the actual QA handler if we have a file
 if [ -n "$FILE_PATH" ]; then
-    ~/.mosaic/rails/qa-hook-handler.sh "$TOOL_NAME" "$FILE_PATH"
+    ~/.mosaic/rails/qa/qa-hook-handler.sh "$TOOL_NAME" "$FILE_PATH"
 else
     echo "[$(date '+%Y-%m-%d %H:%M:%S')] No file path available for QA check" >> logs/qa-automation.log 2>/dev/null || true
-fi
+fi

rails/qa/qa-queue-monitor.sh

@@ -1,6 +1,6 @@
 #!/bin/bash
 # Monitor QA queues with graceful handling of missing directories
-# Location: ~/.mosaic/rails/qa-queue-monitor.sh
+# Location: ~/.mosaic/rails/qa/qa-queue-monitor.sh
 
 PROJECT_ROOT=$(git rev-parse --show-toplevel 2>/dev/null || pwd)
 
@@ -88,4 +88,4 @@ echo "=== Queue Processing Tips ==="
 echo "• View pending reports: ls -la $PROJECT_ROOT/docs/reports/qa-automation/pending/"
 echo "• Check stale reports: find $PROJECT_ROOT -path '*/in-progress/*' -mmin +60"
 echo "• Manual escalation: mv {report} {path}/escalated/"
-echo "• View full log: tail -f $PROJECT_ROOT/logs/qa-automation.log"
+echo "• View full log: tail -f $PROJECT_ROOT/logs/qa-automation.log"

rails/qa/remediation-hook-handler.sh

@@ -1,6 +1,6 @@
 #!/bin/bash
 # Universal remediation hook handler with error recovery
-# Location: ~/.mosaic/rails/remediation-hook-handler.sh
+# Location: ~/.mosaic/rails/qa/remediation-hook-handler.sh
 
 set -euo pipefail
 
@@ -63,4 +63,4 @@ claude -p "Use Task tool to launch auto-remediation-agent for:
 - Remediation Report: $IN_PROGRESS_DIR/$(basename "$REPORT_FILE")
 - Actions File: $ACTIONS_PATH
 - Max Iterations: 5
-Process the report, create action plan using Sequential Thinking, research with Context7, and execute fixes systematically." 2>&1 | tee -a "$LOG_FILE"
+Process the report, create action plan using Sequential Thinking, research with Context7, and execute fixes systematically." 2>&1 | tee -a "$LOG_FILE"