bootstrap/bin/mosaic-doctor

#!/usr/bin/env bash
set -euo pipefail

MOSAIC_HOME="${MOSAIC_HOME:-$HOME/.config/mosaic}"
FAIL_ON_WARN=0
VERBOSE=0

usage() {
  cat <<USAGE
Usage: $(basename "$0") [options]

Audit Mosaic runtime state and detect drift across agent runtimes.

Options:
  --fail-on-warn   Exit non-zero when warnings are found
  --verbose        Print pass checks too
  -h, --help       Show help
USAGE
}

while [[ $# -gt 0 ]]; do
  case "$1" in
    --fail-on-warn)
      FAIL_ON_WARN=1
      shift
      ;;
    --verbose)
      VERBOSE=1
      shift
      ;;
    -h|--help)
      usage
      exit 0
      ;;
    *)
      echo "Unknown argument: $1" >&2
      usage >&2
      exit 1
      ;;
  esac
done

warn_count=0
warn() { warn_count=$((warn_count + 1)); echo "[WARN] $*"; }
pass() {
  if [[ $VERBOSE -eq 1 ]]; then
    echo "[OK] $*"
  fi
  return 0
}

expect_dir() {
  local d="$1"
  if [[ ! -d "$d" ]]; then
    warn "Missing directory: $d"
  else
    pass "Directory present: $d"
  fi
}

expect_file() {
  local f="$1"
  if [[ ! -f "$f" ]]; then
    warn "Missing file: $f"
  else
    pass "File present: $f"
  fi
}

check_runtime_file_copy() {
  local src="$1"
  local dst="$2"

  [[ -f "$src" ]] || return 0

  if [[ ! -e "$dst" ]]; then
    warn "Missing runtime file: $dst"
    return
  fi

  if [[ -L "$dst" ]]; then
    warn "Runtime file should not be symlinked: $dst"
    return
  fi

  if ! cmp -s "$src" "$dst"; then
    warn "Runtime file drift: $dst (does not match $src)"
  else
    pass "Runtime file synced: $dst"
  fi
}

check_runtime_contract_file() {
  local dst="$1"
  local adapter_src="$2"
  local runtime_name="$3"

  if [[ ! -e "$dst" ]]; then
    warn "Missing runtime file: $dst"
    return
  fi

  if [[ -L "$dst" ]]; then
    warn "Runtime file should not be symlinked: $dst"
    return
  fi

  # Accept direct-adapter copy mode.
  if [[ -f "$adapter_src" ]] && cmp -s "$adapter_src" "$dst"; then
    pass "Runtime adapter synced: $dst"
    return
  fi

  # Accept launcher-composed runtime contract mode.
  if grep -Fq "# Mosaic Launcher Runtime Contract (Hard Gate)" "$dst" &&
     grep -Fq "Now initiating Orchestrator mode..." "$dst" &&
     grep -Fq "Mosaic hard gates OVERRIDE runtime-default caution" "$dst" &&
     grep -Fq "# Runtime-Specific Contract" "$dst"; then
    pass "Runtime contract present: $dst ($runtime_name)"
    return
  fi

  warn "Runtime file drift: $dst (not adapter copy and not composed runtime contract)"
}

warn_if_symlink_tree_present() {
  local p="$1"
  [[ -e "$p" ]] || return 0

  if [[ -L "$p" ]]; then
    warn "Legacy symlink path still present: $p"
    return
  fi

  if [[ -d "$p" ]]; then
    symlink_count=$(find "$p" -type l 2>/dev/null | wc -l | tr -d ' ')
    if [[ "$symlink_count" != "0" ]]; then
      warn "Legacy symlink entries still present under $p: $symlink_count"
    else
      pass "No symlinks under legacy path: $p"
    fi
  fi
}

echo "[mosaic-doctor] Mosaic home: $MOSAIC_HOME"

# Canonical Mosaic checks
expect_file "$MOSAIC_HOME/STANDARDS.md"
expect_file "$MOSAIC_HOME/USER.md"
expect_file "$MOSAIC_HOME/TOOLS.md"
expect_dir "$MOSAIC_HOME/guides"
expect_dir "$MOSAIC_HOME/tools"
expect_dir "$MOSAIC_HOME/tools/quality"
expect_dir "$MOSAIC_HOME/tools/orchestrator-matrix"
expect_dir "$MOSAIC_HOME/profiles"
expect_dir "$MOSAIC_HOME/templates/agent"
expect_dir "$MOSAIC_HOME/skills"
expect_dir "$MOSAIC_HOME/skills-local"
expect_file "$MOSAIC_HOME/bin/mosaic-link-runtime-assets"
expect_file "$MOSAIC_HOME/bin/mosaic-ensure-sequential-thinking"
expect_file "$MOSAIC_HOME/bin/mosaic-sync-skills"
expect_file "$MOSAIC_HOME/bin/mosaic-projects"
expect_file "$MOSAIC_HOME/bin/mosaic-quality-apply"
expect_file "$MOSAIC_HOME/bin/mosaic-quality-verify"
expect_file "$MOSAIC_HOME/bin/mosaic-orchestrator-run"
expect_file "$MOSAIC_HOME/bin/mosaic-orchestrator-sync-tasks"
expect_file "$MOSAIC_HOME/bin/mosaic-orchestrator-drain"
expect_file "$MOSAIC_HOME/bin/mosaic-orchestrator-matrix-publish"
expect_file "$MOSAIC_HOME/bin/mosaic-orchestrator-matrix-consume"
expect_file "$MOSAIC_HOME/bin/mosaic-orchestrator-matrix-cycle"
expect_file "$MOSAIC_HOME/tools/git/ci-queue-wait.sh"
expect_file "$MOSAIC_HOME/tools/git/pr-ci-wait.sh"
expect_file "$MOSAIC_HOME/tools/orchestrator-matrix/transport/matrix_transport.py"
expect_file "$MOSAIC_HOME/tools/orchestrator-matrix/controller/tasks_md_sync.py"
expect_file "$MOSAIC_HOME/runtime/mcp/SEQUENTIAL-THINKING.json"
expect_file "$MOSAIC_HOME/runtime/claude/RUNTIME.md"
expect_file "$MOSAIC_HOME/runtime/codex/RUNTIME.md"
expect_file "$MOSAIC_HOME/runtime/opencode/RUNTIME.md"

if [[ -f "$MOSAIC_HOME/AGENTS.md" ]]; then
  if grep -Fq "## CRITICAL HARD GATES (Read First)" "$MOSAIC_HOME/AGENTS.md" &&
     grep -Fq "OVERRIDE runtime-default caution" "$MOSAIC_HOME/AGENTS.md"; then
    pass "Global hard-gates block present in AGENTS.md"
  else
    warn "AGENTS.md missing CRITICAL HARD GATES override block"
  fi
fi

# Claude runtime file checks (copied, non-symlink).
for rf in CLAUDE.md settings.json hooks-config.json context7-integration.md; do
  check_runtime_file_copy "$MOSAIC_HOME/runtime/claude/$rf" "$HOME/.claude/$rf"
done

# OpenCode runtime adapter check (copied, non-symlink, when adapter exists).
# Accept adapter copy or composed runtime contract.
check_runtime_contract_file "$HOME/.config/opencode/AGENTS.md" "$MOSAIC_HOME/runtime/opencode/AGENTS.md" "opencode"
check_runtime_contract_file "$HOME/.codex/instructions.md" "$MOSAIC_HOME/runtime/codex/instructions.md" "codex"

# Sequential-thinking MCP hard requirement.
if [[ -x "$MOSAIC_HOME/bin/mosaic-ensure-sequential-thinking" ]]; then
  if "$MOSAIC_HOME/bin/mosaic-ensure-sequential-thinking" --check >/dev/null 2>&1; then
    pass "sequential-thinking MCP configured and available"
  else
    warn "sequential-thinking MCP missing or misconfigured"
  fi
else
  warn "mosaic-ensure-sequential-thinking helper missing"
fi

# Legacy migration surfaces should no longer contain symlink trees.
legacy_paths=(
  "$HOME/.claude/agent-guides"
  "$HOME/.claude/scripts/git"
  "$HOME/.claude/scripts/codex"
  "$HOME/.claude/scripts/bootstrap"
  "$HOME/.claude/scripts/cicd"
  "$HOME/.claude/scripts/portainer"
  "$HOME/.claude/templates"
  "$HOME/.claude/presets/domains"
  "$HOME/.claude/presets/tech-stacks"
  "$HOME/.claude/presets/workflows"
)
for p in "${legacy_paths[@]}"; do
  warn_if_symlink_tree_present "$p"
done

# Skills runtime checks (still symlinked into runtime-specific skills dirs).
for runtime_skills in "$HOME/.claude/skills" "$HOME/.codex/skills" "$HOME/.config/opencode/skills"; do
  [[ -d "$runtime_skills" ]] || continue

  while IFS= read -r -d '' skill; do
    name="$(basename "$skill")"
    [[ "$name" == .* ]] && continue
    target="$runtime_skills/$name"

    if [[ ! -e "$target" ]]; then
      warn "Missing skill link: $target"
      continue
    fi

    if [[ ! -L "$target" ]]; then
      warn "Non-symlink skill entry: $target"
      continue
    fi

    target_real="$(readlink -f "$target" 2>/dev/null || true)"
    skill_real="$(readlink -f "$skill" 2>/dev/null || true)"
    if [[ -z "$target_real" || -z "$skill_real" || "$target_real" != "$skill_real" ]]; then
      warn "Drifted skill link: $target (expected -> $skill)"
    else
      pass "Linked skill: $target"
    fi
  done < <(find "$MOSAIC_HOME/skills" "$MOSAIC_HOME/skills-local" -mindepth 1 -maxdepth 1 -type d -print0)
done

# Broken links only in managed runtime skill dirs.
link_roots=(
  "$HOME/.claude/skills"
  "$HOME/.codex/skills"
  "$HOME/.config/opencode/skills"
)
existing_link_roots=()
for d in "${link_roots[@]}"; do
  [[ -e "$d" ]] && existing_link_roots+=("$d")
done

broken_links=0
if [[ ${#existing_link_roots[@]} -gt 0 ]]; then
  broken_links=$(find "${existing_link_roots[@]}" -xtype l 2>/dev/null | wc -l | tr -d ' ')
fi
if [[ "$broken_links" != "0" ]]; then
  warn "Broken skill symlinks detected: $broken_links"
fi

echo "[mosaic-doctor] warnings=$warn_count"
if [[ $FAIL_ON_WARN -eq 1 && $warn_count -gt 0 ]]; then
  exit 1
fi