feat(brain): @mosaic/brain structured data service (#11)

Co-authored-by: Jason Woltje <jason@diversecanvas.com>
Co-committed-by: Jason Woltje <jason@diversecanvas.com>

docs/scratchpads/brain-service.md

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+# Scratchpad: @mosaic/brain Structured Data Service
+
+**Issue:** #10
+**Branch:** feat/brain-service
+**PRD:** jarvis-brain/docs/planning/MOSAIC-BRAIN-MEMORY-PRD.md
+
+## Objective
+
+Implement @mosaic/brain as a Fastify service exposing structured data (tasks, projects, events, missions, etc.) via MCP + REST with JSON file backend.
+
+## Plan
+
+1. [x] Add brain data types to @mosaic/types
+2. [ ] Scaffold packages/brain/ with Fastify + MCP SDK
+3. [ ] Implement JSON file storage adapter with locking
+4. [ ] Implement collections: tasks, projects, events, agents, tickets, appreciations, missions, mission_tasks
+5. [ ] Implement MCP tools (query + mutation + mission)
+6. [ ] Implement REST API (mirrors MCP)
+7. [ ] Bearer token auth middleware
+8. [ ] brain_today computed endpoint
+9. [ ] brain_stale, brain_stats, brain_audit, brain_search, brain_graph
+10. [ ] Dockerfile + docker-compose
+11. [ ] Tests
+12. [ ] Code review
+13. [ ] Commit, push, PR, merge
+
+## Progress
+
+- 2026-03-10: Issue #10 created, branch created, starting implementation
+
+## Risks
+
+- Types package already has `Task`/`TaskStatus`/`TaskPriority` for queue — need namespacing
+- Large implementation surface — focus on core CRUD first, computed endpoints second
+
+## Decisions
+
+- Brain types exported from `@mosaic/types` under `Brain` prefix to avoid queue type conflicts
+- JSON storage uses one file per collection
+- In-memory index rebuilt on startup

packages/brain/Dockerfile

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+FROM node:22-alpine AS builder
+WORKDIR /app
+COPY package.json tsconfig.json ./
+COPY src/ src/
+# In standalone mode, @mosaic/types is bundled or installed from registry
+RUN npm install && npm run build
+
+FROM node:22-alpine
+WORKDIR /app
+COPY --from=builder /app/dist/ dist/
+COPY --from=builder /app/node_modules/ node_modules/
+COPY package.json ./
+ENV NODE_ENV=production
+ENV PORT=8100
+ENV MOSAIC_BRAIN_DATA_DIR=/data
+EXPOSE 8100
+VOLUME /data
+CMD ["node", "dist/index.js"]

packages/brain/package.json

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+{
+  "name": "@mosaic/brain",
+  "version": "0.1.0",
+  "type": "module",
+  "main": "./dist/index.js",
+  "types": "./dist/index.d.ts",
+  "bin": {
+    "mosaic-brain": "./dist/index.js"
+  },
+  "exports": {
+    ".": {
+      "import": "./dist/index.js",
+      "types": "./dist/index.d.ts"
+    }
+  },
+  "files": [
+    "dist"
+  ],
+  "scripts": {
+    "build": "tsc -p tsconfig.json",
+    "dev": "tsx watch src/index.ts",
+    "start": "node dist/index.js",
+    "typecheck": "tsc --noEmit",
+    "lint": "echo 'ok'",
+    "test": "vitest run"
+  },
+  "dependencies": {
+    "@modelcontextprotocol/sdk": "^1.12.1",
+    "@mosaic/types": "workspace:*",
+    "fastify": "^5.3.3",
+    "proper-lockfile": "^4.1.2",
+    "zod": "^3.24.4"
+  },
+  "devDependencies": {
+    "@types/node": "^22",
+    "@types/proper-lockfile": "^4",
+    "tsx": "^4",
+    "typescript": "^5",
+    "vitest": "^3"
+  },
+  "publishConfig": {
+    "registry": "https://git.mosaicstack.dev/api/packages/mosaic/npm",
+    "access": "public"
+  }
+}

packages/brain/src/index.ts

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+#!/usr/bin/env node
+
+import Fastify from 'fastify';
+import { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
+import { StreamableHTTPServerTransport } from '@modelcontextprotocol/sdk/server/streamableHttp.js';
+import { JsonStore } from './storage/json-store.js';
+import { Collections } from './storage/collections.js';
+import { requireAuth } from './middleware/auth.js';
+import { registerRoutes } from './routes/api.js';
+import { registerMcpTools } from './mcp/tools.js';
+
+const HOST = process.env['HOST'] ?? '0.0.0.0';
+const PORT = Number(process.env['PORT'] ?? 8100);
+const DATA_DIR = process.env['MOSAIC_BRAIN_DATA_DIR'] ?? './data';
+
+/**
+ * Create a fresh MCP server instance with all tools registered.
+ * Each HTTP request gets its own instance to avoid state leaks.
+ */
+function createMcpServer(collections: Collections): McpServer {
+  const mcp = new McpServer({
+    name: 'mosaic-brain',
+    version: '0.1.0',
+  });
+  registerMcpTools(mcp, collections);
+  return mcp;
+}
+
+async function main(): Promise<void> {
+  // --- Storage ---
+  const store = new JsonStore({ dataDir: DATA_DIR });
+  await store.init();
+  const collections = new Collections(store);
+
+  // --- Fastify ---
+  const app = Fastify({ logger: true });
+
+  // Auth on all /v1 and /mcp routes
+  app.addHook('onRequest', async (req, reply) => {
+    if (req.url.startsWith('/v1/') || req.url === '/mcp') {
+      await requireAuth(req, reply);
+    }
+  });
+
+  // REST API
+  registerRoutes(app, collections);
+
+  // MCP over HTTP (Streamable HTTP transport)
+  // Each request gets a fresh McpServer + transport to avoid state leaks
+  app.all('/mcp', async (req, reply) => {
+    const mcp = createMcpServer(collections);
+    const transport = new StreamableHTTPServerTransport({
+      sessionIdGenerator: undefined, // stateless
+    });
+    await mcp.connect(transport);
+
+    if (req.method === 'POST') {
+      await transport.handleRequest(
+        req.raw,
+        reply.raw,
+        req.body as Record<string, unknown>,
+      );
+    } else if (req.method === 'GET') {
+      await transport.handleRequest(req.raw, reply.raw);
+    } else if (req.method === 'DELETE') {
+      await transport.handleRequest(req.raw, reply.raw);
+    } else {
+      reply.code(405).send({ error: 'Method not allowed' });
+    }
+  });
+
+  // --- Start ---
+  await app.listen({ host: HOST, port: PORT });
+  console.log(`mosaic-brain listening on ${HOST}:${PORT}`);
+  console.log(`  REST API: http://${HOST}:${PORT}/v1/`);
+  console.log(`  MCP:      http://${HOST}:${PORT}/mcp`);
+  console.log(`  Data dir: ${DATA_DIR}`);
+}
+
+main().catch((err) => {
+  console.error('Failed to start mosaic-brain:', err);
+  process.exit(1);
+});

packages/brain/src/mcp/tools.ts

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+import { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
+import { z } from 'zod';
+import type { Collections } from '../storage/collections.js';
+import {
+  BrainTaskSchema, BrainTaskUpdateSchema,
+  BrainProjectSchema, BrainProjectUpdateSchema,
+  BrainEventSchema, BrainEventUpdateSchema,
+  BrainAgentUpdateSchema,
+  BrainMissionSchema, BrainMissionUpdateSchema,
+  BrainMissionTaskSchema, BrainMissionTaskUpdateSchema,
+  BrainDomainSchema, TaskPrioritySchema, BrainTaskStatusSchema,
+  BrainProjectStatusSchema, BrainEventTypeSchema, BrainEventStatusSchema,
+  BrainMissionStatusSchema, BrainAgentStatusSchema,
+} from '../schemas.js';
+
+export function registerMcpTools(mcp: McpServer, collections: Collections): void {
+
+  // === Query Tools ===
+
+  mcp.tool('brain_tasks',
+    'Query tasks with filters. Returns sorted by priority then due date.',
+    {
+      status: BrainTaskStatusSchema.optional(),
+      priority: TaskPrioritySchema.optional(),
+      domain: BrainDomainSchema.optional(),
+      project: z.string().optional(),
+      due_before: z.string().optional(),
+      due_after: z.string().optional(),
+      assignee: z.string().optional(),
+      limit: z.number().int().positive().optional(),
+    },
+    async (args) => {
+      const tasks = await collections.getTasks(args);
+      return { content: [{ type: 'text' as const, text: JSON.stringify(tasks, null, 2) }] };
+    },
+  );
+
+  mcp.tool('brain_projects',
+    'Query projects with filters. Returns sorted by priority.',
+    {
+      status: BrainProjectStatusSchema.optional(),
+      domain: BrainDomainSchema.optional(),
+      priority_min: z.number().int().optional(),
+      priority_max: z.number().int().optional(),
+      limit: z.number().int().positive().optional(),
+    },
+    async (args) => {
+      const projects = await collections.getProjects(args);
+      return { content: [{ type: 'text' as const, text: JSON.stringify(projects, null, 2) }] };
+    },
+  );
+
+  mcp.tool('brain_events',
+    'Query events with filters. Returns sorted by date then time.',
+    {
+      date_from: z.string().optional(),
+      date_to: z.string().optional(),
+      domain: BrainDomainSchema.optional(),
+      type: BrainEventTypeSchema.optional(),
+      status: BrainEventStatusSchema.optional(),
+      limit: z.number().int().positive().optional(),
+    },
+    async (args) => {
+      const events = await collections.getEvents(args);
+      return { content: [{ type: 'text' as const, text: JSON.stringify(events, null, 2) }] };
+    },
+  );
+
+  mcp.tool('brain_agents',
+    'Query active agent sessions.',
+    {
+      status: BrainAgentStatusSchema.optional(),
+      project: z.string().optional(),
+    },
+    async (args) => {
+      const agents = await collections.getAgents(args);
+      return { content: [{ type: 'text' as const, text: JSON.stringify(agents, null, 2) }] };
+    },
+  );
+
+  mcp.tool('brain_tickets',
+    'Query helpdesk tickets.',
+    {
+      status: z.number().int().optional(),
+      priority: z.number().int().optional(),
+      limit: z.number().int().positive().optional(),
+    },
+    async (args) => {
+      const tickets = await collections.getTickets(args);
+      return { content: [{ type: 'text' as const, text: JSON.stringify(tickets, null, 2) }] };
+    },
+  );
+
+  mcp.tool('brain_today',
+    'Daily summary: events, near-term tasks, stale items, blocked items, active missions, stats.',
+    { date: z.string().optional() },
+    async (args) => {
+      const summary = await collections.getToday(args.date);
+      return { content: [{ type: 'text' as const, text: JSON.stringify(summary, null, 2) }] };
+    },
+  );
+
+  mcp.tool('brain_stale',
+    'Find tasks and projects not updated in N+ days.',
+    { days: z.number().int().positive().default(7) },
+    async (args) => {
+      const report = await collections.getStale(args.days);
+      return { content: [{ type: 'text' as const, text: JSON.stringify(report, null, 2) }] };
+    },
+  );
+
+  mcp.tool('brain_stats',
+    'Brain statistics: counts by collection, domain, status.',
+    {},
+    async () => {
+      const stats = await collections.getStats();
+      return { content: [{ type: 'text' as const, text: JSON.stringify(stats, null, 2) }] };
+    },
+  );
+
+  mcp.tool('brain_search',
+    'Full-text search across titles and notes (deterministic, not semantic).',
+    {
+      query: z.string().min(1),
+      collection: z.enum(['tasks', 'projects', 'events', 'missions']).optional(),
+    },
+    async (args) => {
+      const results = await collections.search(args.query, args.collection);
+      return { content: [{ type: 'text' as const, text: JSON.stringify(results, null, 2) }] };
+    },
+  );
+
+  mcp.tool('brain_audit',
+    'Data integrity check: orphan references, broken dependencies, missing fields, duplicate IDs.',
+    {},
+    async () => {
+      const result = await collections.audit();
+      return { content: [{ type: 'text' as const, text: JSON.stringify(result, null, 2) }] };
+    },
+  );
+
+  // === Mutation Tools ===
+
+  mcp.tool('brain_add_task',
+    'Create a new task with schema validation.',
+    BrainTaskSchema.shape,
+    async (args) => {
+      try {
+        const task = BrainTaskSchema.parse(args);
+        const result = await collections.addTask(task);
+        return { content: [{ type: 'text' as const, text: JSON.stringify(result, null, 2) }] };
+      } catch (e: unknown) {
+        return { content: [{ type: 'text' as const, text: JSON.stringify({ error: String(e) }) }], isError: true };
+      }
+    },
+  );
+
+  mcp.tool('brain_update_task',
+    'Update an existing task. Auto-sets updated timestamp.',
+    {
+      id: z.string(),
+      ...BrainTaskUpdateSchema.shape,
+    },
+    async ({ id, ...updates }) => {
+      try {
+        const result = await collections.updateTask(id, updates);
+        return { content: [{ type: 'text' as const, text: JSON.stringify(result, null, 2) }] };
+      } catch (e: unknown) {
+        return { content: [{ type: 'text' as const, text: JSON.stringify({ error: String(e) }) }], isError: true };
+      }
+    },
+  );
+
+  mcp.tool('brain_add_project',
+    'Create a new project with schema validation.',
+    BrainProjectSchema.shape,
+    async (args) => {
+      try {
+        const project = BrainProjectSchema.parse(args);
+        const result = await collections.addProject(project);
+        return { content: [{ type: 'text' as const, text: JSON.stringify(result, null, 2) }] };
+      } catch (e: unknown) {
+        return { content: [{ type: 'text' as const, text: JSON.stringify({ error: String(e) }) }], isError: true };
+      }
+    },
+  );
+
+  mcp.tool('brain_update_project',
+    'Update an existing project. Auto-sets updated timestamp.',
+    {
+      id: z.string(),
+      ...BrainProjectUpdateSchema.shape,
+    },
+    async ({ id, ...updates }) => {
+      try {
+        const result = await collections.updateProject(id, updates);
+        return { content: [{ type: 'text' as const, text: JSON.stringify(result, null, 2) }] };
+      } catch (e: unknown) {
+        return { content: [{ type: 'text' as const, text: JSON.stringify({ error: String(e) }) }], isError: true };
+      }
+    },
+  );
+
+  mcp.tool('brain_add_event',
+    'Create a new event with schema validation.',
+    BrainEventSchema.shape,
+    async (args) => {
+      try {
+        const event = BrainEventSchema.parse(args);
+        const result = await collections.addEvent(event);
+        return { content: [{ type: 'text' as const, text: JSON.stringify(result, null, 2) }] };
+      } catch (e: unknown) {
+        return { content: [{ type: 'text' as const, text: JSON.stringify({ error: String(e) }) }], isError: true };
+      }
+    },
+  );
+
+  mcp.tool('brain_update_event',
+    'Update an existing event.',
+    {
+      id: z.string(),
+      ...BrainEventUpdateSchema.shape,
+    },
+    async ({ id, ...updates }) => {
+      try {
+        const result = await collections.updateEvent(id, updates);
+        return { content: [{ type: 'text' as const, text: JSON.stringify(result, null, 2) }] };
+      } catch (e: unknown) {
+        return { content: [{ type: 'text' as const, text: JSON.stringify({ error: String(e) }) }], isError: true };
+      }
+    },
+  );
+
+  mcp.tool('brain_update_agent',
+    'Update an agent session (auto-creates if not found).',
+    {
+      id: z.string(),
+      ...BrainAgentUpdateSchema.shape,
+    },
+    async ({ id, ...updates }) => {
+      try {
+        const result = await collections.updateAgent(id, updates);
+        return { content: [{ type: 'text' as const, text: JSON.stringify(result, null, 2) }] };
+      } catch (e: unknown) {
+        return { content: [{ type: 'text' as const, text: JSON.stringify({ error: String(e) }) }], isError: true };
+      }
+    },
+  );
+
+  // === Mission Tools ===
+
+  mcp.tool('brain_missions',
+    'List and filter missions.',
+    {
+      status: BrainMissionStatusSchema.optional(),
+      project: z.string().optional(),
+      limit: z.number().int().positive().optional(),
+    },
+    async (args) => {
+      const missions = await collections.getMissions(args);
+      return { content: [{ type: 'text' as const, text: JSON.stringify(missions, null, 2) }] };
+    },
+  );
+
+  mcp.tool('brain_mission',
+    'Get, create, or update a single mission. For read: provide id only. For create: provide all required fields. For update: provide id plus fields to change.',
+    {
+      id: z.string(),
+      title: z.string().optional(),
+      project: z.string().optional(),
+      prd_path: z.string().nullish(),
+      status: BrainMissionStatusSchema.optional(),
+      created: z.string().optional(),
+      updated: z.string().optional(),
+      notes: z.string().nullish(),
+      action: z.enum(['get', 'create', 'update']).default('get'),
+    },
+    async (args) => {
+      try {
+        const { action, ...fields } = args;
+        if (action === 'get') {
+          const summary = await collections.getMissionSummary(fields.id);
+          if (!summary) return { content: [{ type: 'text' as const, text: JSON.stringify({ error: 'Mission not found' }) }], isError: true };
+          return { content: [{ type: 'text' as const, text: JSON.stringify(summary, null, 2) }] };
+        }
+        if (action === 'create') {
+          const mission = BrainMissionSchema.parse(fields);
+          const result = await collections.addMission(mission);
+          return { content: [{ type: 'text' as const, text: JSON.stringify(result, null, 2) }] };
+        }
+        // update
+        const { id, ...updates } = fields;
+        const result = await collections.updateMission(id, updates);
+        return { content: [{ type: 'text' as const, text: JSON.stringify(result, null, 2) }] };
+      } catch (e: unknown) {
+        return { content: [{ type: 'text' as const, text: JSON.stringify({ error: String(e) }) }], isError: true };
+      }
+    },
+  );
+
+  mcp.tool('brain_mission_tasks',
+    'List, create, or update tasks within a mission. For list: provide mission_id. For create: provide all required fields. For update: provide mission_id, id, and fields to change.',
+    {
+      mission_id: z.string(),
+      id: z.string().optional(),
+      title: z.string().optional(),
+      phase: z.string().nullish(),
+      status: BrainTaskStatusSchema.optional(),
+      priority: TaskPrioritySchema.optional(),
+      dependencies: z.array(z.string()).optional(),
+      assigned_to: z.string().nullish(),
+      pr: z.string().nullish(),
+      order: z.number().int().optional(),
+      created: z.string().optional(),
+      updated: z.string().optional(),
+      completed_at: z.string().nullish(),
+      notes: z.string().nullish(),
+      action: z.enum(['list', 'create', 'update']).default('list'),
+    },
+    async (args) => {
+      try {
+        const { action, mission_id, ...fields } = args;
+        if (action === 'list') {
+          const tasks = await collections.getMissionTasks({
+            mission_id,
+            status: fields.status,
+            phase: fields.phase ?? undefined,
+            priority: fields.priority,
+          });
+          return { content: [{ type: 'text' as const, text: JSON.stringify(tasks, null, 2) }] };
+        }
+        if (action === 'create') {
+          const task = BrainMissionTaskSchema.parse({ ...fields, mission_id });
+          const result = await collections.addMissionTask(task);
+          return { content: [{ type: 'text' as const, text: JSON.stringify(result, null, 2) }] };
+        }
+        // update
+        if (!fields.id) return { content: [{ type: 'text' as const, text: JSON.stringify({ error: 'id required for update' }) }], isError: true };
+        const { id, ...updates } = fields;
+        const result = await collections.updateMissionTask(mission_id, id, updates);
+        return { content: [{ type: 'text' as const, text: JSON.stringify(result, null, 2) }] };
+      } catch (e: unknown) {
+        return { content: [{ type: 'text' as const, text: JSON.stringify({ error: String(e) }) }], isError: true };
+      }
+    },
+  );
+}

packages/brain/src/middleware/auth.ts

@@ -0,0 +1,25 @@
+import { timingSafeEqual } from 'node:crypto';
+import type { FastifyRequest, FastifyReply } from 'fastify';
+
+const API_KEY = process.env['MOSAIC_BRAIN_API_KEY'] ?? '';
+
+function safeCompare(a: string, b: string): boolean {
+  if (a.length !== b.length) return false;
+  return timingSafeEqual(Buffer.from(a), Buffer.from(b));
+}
+
+export async function requireAuth(request: FastifyRequest, reply: FastifyReply): Promise<void> {
+  if (!API_KEY) return; // No key configured = open access (dev mode)
+
+  const authHeader = request.headers.authorization;
+  if (!authHeader?.startsWith('Bearer ')) {
+    reply.code(401).send({ error: 'Missing or invalid Authorization header', code: 'UNAUTHORIZED' });
+    return reply.hijack();
+  }
+
+  const token = authHeader.slice(7);
+  if (!safeCompare(token, API_KEY)) {
+    reply.code(401).send({ error: 'Invalid API key', code: 'UNAUTHORIZED' });
+    return reply.hijack();
+  }
+}

packages/brain/src/routes/api.ts

@@ -0,0 +1,190 @@
+import type { FastifyInstance } from 'fastify';
+import type { Collections } from '../storage/collections.js';
+import {
+  BrainTaskSchema, BrainTaskUpdateSchema,
+  BrainProjectSchema, BrainProjectUpdateSchema,
+  BrainEventSchema, BrainEventUpdateSchema,
+  BrainAgentUpdateSchema,
+  BrainMissionSchema, BrainMissionUpdateSchema,
+  BrainMissionTaskSchema, BrainMissionTaskUpdateSchema,
+} from '../schemas.js';
+
+function parseFilters(query: Record<string, string | undefined>): Record<string, unknown> {
+  const filters: Record<string, unknown> = {};
+  for (const [key, value] of Object.entries(query)) {
+    if (value === undefined) continue;
+    if (key === 'limit' || key === 'priority_min' || key === 'priority_max') {
+      filters[key] = Number(value);
+    } else {
+      filters[key] = value;
+    }
+  }
+  return filters;
+}
+
+export function registerRoutes(app: FastifyInstance, collections: Collections): void {
+
+  // === Health ===
+  app.get('/health', async () => ({ status: 'ok', service: 'mosaic-brain', version: '0.1.0' }));
+
+  // === Tasks ===
+  app.get('/v1/tasks', async (req) => collections.getTasks(parseFilters(req.query as Record<string, string>)));
+  app.get<{ Params: { id: string } }>('/v1/tasks/:id', async (req, reply) => {
+    const task = await collections.getTask(req.params.id);
+    if (!task) return reply.code(404).send({ error: 'Task not found', code: 'NOT_FOUND' });
+    return task;
+  });
+  app.post('/v1/tasks', async (req, reply) => {
+    try {
+      const parsed = BrainTaskSchema.parse(req.body);
+      return await collections.addTask(parsed);
+    } catch (e: unknown) {
+      return reply.code(400).send({ error: String(e), code: 'VALIDATION_ERROR' });
+    }
+  });
+  app.patch<{ Params: { id: string } }>('/v1/tasks/:id', async (req, reply) => {
+    try {
+      const parsed = BrainTaskUpdateSchema.parse(req.body);
+      return await collections.updateTask(req.params.id, parsed);
+    } catch (e: unknown) {
+      return reply.code(400).send({ error: String(e), code: 'VALIDATION_ERROR' });
+    }
+  });
+
+  // === Projects ===
+  app.get('/v1/projects', async (req) => collections.getProjects(parseFilters(req.query as Record<string, string>)));
+  app.get<{ Params: { id: string } }>('/v1/projects/:id', async (req, reply) => {
+    const project = await collections.getProject(req.params.id);
+    if (!project) return reply.code(404).send({ error: 'Project not found', code: 'NOT_FOUND' });
+    return project;
+  });
+  app.post('/v1/projects', async (req, reply) => {
+    try {
+      const parsed = BrainProjectSchema.parse(req.body);
+      return await collections.addProject(parsed);
+    } catch (e: unknown) {
+      return reply.code(400).send({ error: String(e), code: 'VALIDATION_ERROR' });
+    }
+  });
+  app.patch<{ Params: { id: string } }>('/v1/projects/:id', async (req, reply) => {
+    try {
+      const parsed = BrainProjectUpdateSchema.parse(req.body);
+      return await collections.updateProject(req.params.id, parsed);
+    } catch (e: unknown) {
+      return reply.code(400).send({ error: String(e), code: 'VALIDATION_ERROR' });
+    }
+  });
+
+  // === Events ===
+  app.get('/v1/events', async (req) => collections.getEvents(parseFilters(req.query as Record<string, string>)));
+  app.get<{ Params: { id: string } }>('/v1/events/:id', async (req, reply) => {
+    const event = await collections.getEvent(req.params.id);
+    if (!event) return reply.code(404).send({ error: 'Event not found', code: 'NOT_FOUND' });
+    return event;
+  });
+  app.post('/v1/events', async (req, reply) => {
+    try {
+      const parsed = BrainEventSchema.parse(req.body);
+      return await collections.addEvent(parsed);
+    } catch (e: unknown) {
+      return reply.code(400).send({ error: String(e), code: 'VALIDATION_ERROR' });
+    }
+  });
+  app.patch<{ Params: { id: string } }>('/v1/events/:id', async (req, reply) => {
+    try {
+      const parsed = BrainEventUpdateSchema.parse(req.body);
+      return await collections.updateEvent(req.params.id, parsed);
+    } catch (e: unknown) {
+      return reply.code(400).send({ error: String(e), code: 'VALIDATION_ERROR' });
+    }
+  });
+
+  // === Agents ===
+  app.get('/v1/agents', async (req) => collections.getAgents(parseFilters(req.query as Record<string, string>)));
+  app.patch<{ Params: { id: string } }>('/v1/agents/:id', async (req, reply) => {
+    try {
+      const parsed = BrainAgentUpdateSchema.parse(req.body);
+      return await collections.updateAgent(req.params.id, parsed);
+    } catch (e: unknown) {
+      return reply.code(400).send({ error: String(e), code: 'VALIDATION_ERROR' });
+    }
+  });
+
+  // === Tickets ===
+  app.get('/v1/tickets', async (req) => {
+    const q = req.query as Record<string, string>;
+    return collections.getTickets({
+      status: q['status'] ? Number(q['status']) : undefined,
+      priority: q['priority'] ? Number(q['priority']) : undefined,
+      limit: q['limit'] ? Number(q['limit']) : undefined,
+    });
+  });
+
+  // === Missions ===
+  app.get('/v1/missions', async (req) => collections.getMissions(parseFilters(req.query as Record<string, string>)));
+  app.get<{ Params: { id: string } }>('/v1/missions/:id', async (req, reply) => {
+    const summary = await collections.getMissionSummary(req.params.id);
+    if (!summary) return reply.code(404).send({ error: 'Mission not found', code: 'NOT_FOUND' });
+    return summary;
+  });
+  app.post('/v1/missions', async (req, reply) => {
+    try {
+      const parsed = BrainMissionSchema.parse(req.body);
+      return await collections.addMission(parsed);
+    } catch (e: unknown) {
+      return reply.code(400).send({ error: String(e), code: 'VALIDATION_ERROR' });
+    }
+  });
+  app.patch<{ Params: { id: string } }>('/v1/missions/:id', async (req, reply) => {
+    try {
+      const parsed = BrainMissionUpdateSchema.parse(req.body);
+      return await collections.updateMission(req.params.id, parsed);
+    } catch (e: unknown) {
+      return reply.code(400).send({ error: String(e), code: 'VALIDATION_ERROR' });
+    }
+  });
+
+  // === Mission Tasks ===
+  app.get<{ Params: { id: string } }>('/v1/missions/:id/tasks', async (req) => {
+    const q = req.query as Record<string, string>;
+    return collections.getMissionTasks({
+      mission_id: req.params.id,
+      status: q['status'] as any,
+      phase: q['phase'],
+      priority: q['priority'] as any,
+    });
+  });
+  app.post<{ Params: { id: string } }>('/v1/missions/:id/tasks', async (req, reply) => {
+    try {
+      const parsed = BrainMissionTaskSchema.parse({ ...(req.body as object), mission_id: req.params.id });
+      return await collections.addMissionTask(parsed);
+    } catch (e: unknown) {
+      return reply.code(400).send({ error: String(e), code: 'VALIDATION_ERROR' });
+    }
+  });
+  app.patch<{ Params: { id: string; taskId: string } }>('/v1/missions/:id/tasks/:taskId', async (req, reply) => {
+    try {
+      const parsed = BrainMissionTaskUpdateSchema.parse(req.body);
+      return await collections.updateMissionTask(req.params.id, req.params.taskId, parsed);
+    } catch (e: unknown) {
+      return reply.code(400).send({ error: String(e), code: 'VALIDATION_ERROR' });
+    }
+  });
+
+  // === Computed Endpoints ===
+  app.get('/v1/today', async (req) => {
+    const q = req.query as Record<string, string>;
+    return collections.getToday(q['date']);
+  });
+  app.get('/v1/stale', async (req) => {
+    const q = req.query as Record<string, string>;
+    return collections.getStale(q['days'] ? Number(q['days']) : undefined);
+  });
+  app.get('/v1/stats', async () => collections.getStats());
+  app.get('/v1/search', async (req) => {
+    const q = req.query as Record<string, string>;
+    if (!q['q']) return [];
+    return collections.search(q['q'], q['collection']);
+  });
+  app.get('/v1/audit', async () => collections.audit());
+}

packages/brain/src/schemas.ts

@@ -0,0 +1,222 @@
+import { z } from 'zod';
+
+// === Enums ===
+
+export const BrainDomainSchema = z.enum([
+  'work', 'software-dev', 'homelab', 'family', 'marriage',
+  'finances', 'fitness', 'music', 'home-improvement', 'woodworking',
+  'home', 'consulting', 'personal',
+]);
+
+export const TaskPrioritySchema = z.enum(['critical', 'high', 'medium', 'low']);
+
+export const BrainTaskStatusSchema = z.enum([
+  'backlog', 'scheduled', 'in-progress', 'blocked', 'done', 'cancelled',
+]);
+
+export const BrainProjectStatusSchema = z.enum([
+  'planning', 'active', 'paused', 'blocked', 'completed', 'archived',
+]);
+
+export const BrainAgentStatusSchema = z.enum(['active', 'idle', 'blocked', 'completed']);
+
+export const BrainEventTypeSchema = z.enum([
+  'meeting', 'deadline', 'maintenance', 'event', 'recurring',
+  'milestone', 'task', 'constraint', 'client-work', 'appointment',
+  'reminder', 'conflict', 'time-off',
+]);
+
+export const BrainEventStatusSchema = z.enum([
+  'scheduled', 'confirmed', 'tentative', 'completed', 'cancelled',
+  'done', 'blocked', 'postponed', 'deferred', 'in-progress',
+  'pending-approval', 'canceled', 'needs-resolution',
+]);
+
+export const BrainMissionStatusSchema = z.enum([
+  'planning', 'active', 'blocked', 'completed', 'cancelled',
+]);
+
+// === Record Schemas ===
+
+export const BrainTaskSchema = z.object({
+  id: z.string().regex(/^[a-z0-9-]+$/),
+  title: z.string().min(1),
+  domain: BrainDomainSchema,
+  project: z.string().nullish(),
+  priority: TaskPrioritySchema,
+  status: BrainTaskStatusSchema,
+  progress: z.number().int().min(0).max(100).nullish(),
+  due: z.string().nullish(),
+  blocks: z.array(z.string()).optional().default([]),
+  blocked_by: z.array(z.string()).optional().default([]),
+  related: z.array(z.string()).optional().default([]),
+  canonical_source: z.string().nullish(),
+  assignee: z.string().nullish(),
+  created: z.string(),
+  updated: z.string(),
+  notes: z.string().nullish(),
+  notes_nontechnical: z.string().nullish(),
+});
+
+export const BrainProjectSchema = z.object({
+  id: z.string().regex(/^[a-z0-9-]+$/),
+  name: z.string().min(1),
+  description: z.string().nullish(),
+  domain: BrainDomainSchema,
+  status: BrainProjectStatusSchema,
+  priority: z.number().int().min(1).max(10),
+  progress: z.number().int().min(0).max(100).nullish(),
+  repo: z.string().nullish(),
+  branch: z.string().nullish(),
+  current_milestone: z.string().nullish(),
+  next_milestone: z.string().nullish(),
+  blocker: z.string().nullish(),
+  owner: z.string().nullish(),
+  docs_path: z.string().nullish(),
+  created: z.string(),
+  updated: z.string(),
+  notes: z.string().nullish(),
+  notes_nontechnical: z.string().nullish(),
+});
+
+export const BrainEventSchema = z.object({
+  id: z.string().regex(/^[a-z0-9-]+$/),
+  title: z.string().min(1),
+  date: z.string(),
+  end_date: z.string().nullish(),
+  time: z.string().nullish(),
+  end_time: z.string().nullish(),
+  domain: BrainDomainSchema,
+  type: BrainEventTypeSchema,
+  status: BrainEventStatusSchema.optional().default('scheduled'),
+  priority: TaskPrioritySchema.nullish(),
+  recur: z.boolean().nullish(),
+  recur_rate: z.string().nullish(),
+  recur_start: z.string().nullish(),
+  recur_end: z.string().nullish(),
+  location: z.string().nullish(),
+  project: z.string().nullish(),
+  related_task: z.string().nullish(),
+  related_tasks: z.array(z.string()).optional().default([]),
+  notes: z.string().nullish(),
+  gcal_id: z.string().nullish(),
+  ics_uid: z.string().nullish(),
+});
+
+export const BrainAgentSchema = z.object({
+  id: z.string(),
+  project: z.string(),
+  focus: z.string().nullish(),
+  repo: z.string().nullish(),
+  branch: z.string().nullish(),
+  status: BrainAgentStatusSchema,
+  workload: z.enum(['light', 'medium', 'heavy']).nullish(),
+  next_step: z.string().nullish(),
+  blocker: z.string().nullish(),
+  updated: z.string(),
+});
+
+export const BrainTicketSchema = z.object({
+  id: z.string(),
+  title: z.string().min(1),
+  status: z.number().int(),
+  priority: z.number().int(),
+  urgency: z.number().int(),
+  impact: z.number().int(),
+  date_creation: z.string(),
+  date_mod: z.string(),
+  content: z.string().nullish(),
+  assigned_to: z.string().nullish(),
+});
+
+export const BrainAppreciationSchema = z.object({
+  date: z.string(),
+  from: z.enum(['jason', 'melanie']),
+  to: z.enum(['jason', 'melanie']),
+  text: z.string().min(1),
+});
+
+export const BrainMissionSchema = z.object({
+  id: z.string(),
+  title: z.string().min(1),
+  project: z.string(),
+  prd_path: z.string().nullish(),
+  status: BrainMissionStatusSchema,
+  created: z.string(),
+  updated: z.string(),
+  notes: z.string().nullish(),
+});
+
+export const BrainMissionTaskSchema = z.object({
+  id: z.string(),
+  mission_id: z.string(),
+  title: z.string().min(1),
+  phase: z.string().nullish(),
+  status: BrainTaskStatusSchema,
+  priority: TaskPrioritySchema,
+  dependencies: z.array(z.string()).default([]),
+  assigned_to: z.string().nullish(),
+  pr: z.string().nullish(),
+  order: z.number().int(),
+  created: z.string(),
+  updated: z.string(),
+  completed_at: z.string().nullish(),
+  notes: z.string().nullish(),
+});
+
+// === Partial schemas for updates ===
+
+export const BrainTaskUpdateSchema = BrainTaskSchema.partial().omit({ id: true });
+export const BrainProjectUpdateSchema = BrainProjectSchema.partial().omit({ id: true });
+export const BrainEventUpdateSchema = BrainEventSchema.partial().omit({ id: true });
+export const BrainAgentUpdateSchema = BrainAgentSchema.partial().omit({ id: true });
+export const BrainMissionUpdateSchema = BrainMissionSchema.partial().omit({ id: true });
+export const BrainMissionTaskUpdateSchema = BrainMissionTaskSchema.partial().omit({ id: true, mission_id: true });
+
+// === Collection file schemas ===
+
+export const TasksFileSchema = z.object({
+  version: z.string(),
+  tasks: z.array(BrainTaskSchema),
+});
+
+export const ProjectsFileSchema = z.object({
+  version: z.string(),
+  projects: z.array(BrainProjectSchema),
+});
+
+export const EventsFileSchema = z.object({
+  version: z.string(),
+  domain: BrainDomainSchema,
+  events: z.array(BrainEventSchema),
+  overdue: z.array(z.object({
+    id: z.string(),
+    title: z.string(),
+    original_due: z.string().optional(),
+    domain: z.string(),
+    notes: z.string().nullish(),
+  })).default([]),
+});
+
+export const AgentsFileSchema = z.object({
+  version: z.string(),
+  agents: z.array(BrainAgentSchema),
+});
+
+export const MissionsFileSchema = z.object({
+  version: z.string(),
+  missions: z.array(BrainMissionSchema),
+});
+
+export const MissionTasksFileSchema = z.object({
+  version: z.string(),
+  mission_tasks: z.array(BrainMissionTaskSchema),
+});
+
+// Inferred types for convenience
+export type BrainTaskInput = z.input<typeof BrainTaskSchema>;
+export type BrainProjectInput = z.input<typeof BrainProjectSchema>;
+export type BrainEventInput = z.input<typeof BrainEventSchema>;
+export type BrainAgentInput = z.input<typeof BrainAgentSchema>;
+export type BrainMissionInput = z.input<typeof BrainMissionSchema>;
+export type BrainMissionTaskInput = z.input<typeof BrainMissionTaskSchema>;

packages/brain/src/storage/collections.ts

@@ -0,0 +1,536 @@
+import type {
+  BrainTask, BrainProject, BrainEvent, BrainAgent,
+  BrainTicket, BrainAppreciation, BrainMission, BrainMissionTask,
+  BrainTaskFilters, BrainProjectFilters, BrainEventFilters,
+  BrainMissionFilters, BrainMissionTaskFilters,
+  BrainMissionSummary, BrainTodaySummary, BrainStats,
+  BrainStaleReport, BrainAuditResult, BrainSearchResult,
+  TaskPriority,
+} from '@mosaic/types';
+import { JsonStore } from './json-store.js';
+
+function today(): string {
+  return new Date().toISOString().slice(0, 10);
+}
+
+interface TasksFile { version: string; tasks: BrainTask[] }
+interface ProjectsFile { version: string; projects: BrainProject[] }
+interface EventsFile { version: string; events: BrainEvent[] }
+interface AgentsFile { version: string; agents: BrainAgent[] }
+interface TicketsFile { version: string; tickets: BrainTicket[] }
+interface AppreciationsFile { version: string; appreciations: BrainAppreciation[] }
+interface MissionsFile { version: string; missions: BrainMission[] }
+interface MissionTasksFile { version: string; mission_tasks: BrainMissionTask[] }
+
+const DEFAULT_TASKS: TasksFile = { version: '2.0', tasks: [] };
+const DEFAULT_PROJECTS: ProjectsFile = { version: '2.0', projects: [] };
+const DEFAULT_EVENTS: EventsFile = { version: '2.0', events: [] };
+const DEFAULT_AGENTS: AgentsFile = { version: '2.0', agents: [] };
+const DEFAULT_TICKETS: TicketsFile = { version: '2.0', tickets: [] };
+const DEFAULT_APPRECIATIONS: AppreciationsFile = { version: '2.0', appreciations: [] };
+const DEFAULT_MISSIONS: MissionsFile = { version: '2.0', missions: [] };
+const DEFAULT_MISSION_TASKS: MissionTasksFile = { version: '2.0', mission_tasks: [] };
+
+const PRIORITY_ORDER: Record<string, number> = { critical: 0, high: 1, medium: 2, low: 3 };
+
+function matchesFilter<T>(item: T, filters: object): boolean {
+  for (const [key, value] of Object.entries(filters as Record<string, unknown>)) {
+    if (value === undefined || value === null) continue;
+    if (key === 'limit') continue;
+    if (key === 'due_before') {
+      if (!(item as Record<string, unknown>)['due'] || (item as Record<string, unknown>)['due']! > value) return false;
+      continue;
+    }
+    if (key === 'due_after') {
+      if (!(item as Record<string, unknown>)['due'] || (item as Record<string, unknown>)['due']! < value) return false;
+      continue;
+    }
+    if (key === 'date_from') {
+      if ((item as Record<string, unknown>)['date']! < value) return false;
+      continue;
+    }
+    if (key === 'date_to') {
+      if ((item as Record<string, unknown>)['date']! > value) return false;
+      continue;
+    }
+    if (key === 'priority_min') {
+      if (((item as Record<string, unknown>)['priority'] as number) < (value as number)) return false;
+      continue;
+    }
+    if (key === 'priority_max') {
+      if (((item as Record<string, unknown>)['priority'] as number) > (value as number)) return false;
+      continue;
+    }
+    if ((item as Record<string, unknown>)[key] !== value) return false;
+  }
+  return true;
+}
+
+function applyLimit<T>(items: T[], limit?: number): T[] {
+  return limit != null && limit > 0 ? items.slice(0, limit) : items;
+}
+
+export class Collections {
+  constructor(private readonly store: JsonStore) {}
+
+  // === Tasks ===
+
+  async getTasks(filters: BrainTaskFilters = {}): Promise<BrainTask[]> {
+    const file = await this.store.read('tasks', DEFAULT_TASKS);
+    const filtered = file.tasks.filter(t => matchesFilter(t, filters));
+    filtered.sort((a, b) =>
+      (PRIORITY_ORDER[a.priority] ?? 9) - (PRIORITY_ORDER[b.priority] ?? 9)
+      || (a.due ?? '9999').localeCompare(b.due ?? '9999'),
+    );
+    return applyLimit(filtered, filters.limit);
+  }
+
+  async getTask(id: string): Promise<BrainTask | null> {
+    const file = await this.store.read('tasks', DEFAULT_TASKS);
+    return file.tasks.find(t => t.id === id) ?? null;
+  }
+
+  async addTask(task: BrainTask): Promise<BrainTask> {
+    const result = await this.store.modify('tasks', DEFAULT_TASKS, (file) => {
+      if (file.tasks.some(t => t.id === task.id)) {
+        throw new Error(`Task '${task.id}' already exists`);
+      }
+      return { ...file, tasks: [...file.tasks, task] };
+    });
+    return result.tasks.find(t => t.id === task.id)!;
+  }
+
+  async updateTask(id: string, updates: Partial<BrainTask>): Promise<BrainTask> {
+    let updated: BrainTask | undefined;
+    await this.store.modify('tasks', DEFAULT_TASKS, (file) => {
+      const idx = file.tasks.findIndex(t => t.id === id);
+      if (idx === -1) throw new Error(`Task '${id}' not found`);
+      const tasks = [...file.tasks];
+      updated = { ...tasks[idx]!, ...updates, id, updated: today() } as BrainTask;
+      tasks[idx] = updated;
+      return { ...file, tasks };
+    });
+    return updated!;
+  }
+
+  // === Projects ===
+
+  async getProjects(filters: BrainProjectFilters = {}): Promise<BrainProject[]> {
+    const file = await this.store.read('projects', DEFAULT_PROJECTS);
+    const filtered = file.projects.filter(p => matchesFilter(p, filters));
+    filtered.sort((a, b) => a.priority - b.priority);
+    return applyLimit(filtered, filters.limit);
+  }
+
+  async getProject(id: string): Promise<BrainProject | null> {
+    const file = await this.store.read('projects', DEFAULT_PROJECTS);
+    return file.projects.find(p => p.id === id) ?? null;
+  }
+
+  async addProject(project: BrainProject): Promise<BrainProject> {
+    const result = await this.store.modify('projects', DEFAULT_PROJECTS, (file) => {
+      if (file.projects.some(p => p.id === project.id)) {
+        throw new Error(`Project '${project.id}' already exists`);
+      }
+      return { ...file, projects: [...file.projects, project] };
+    });
+    return result.projects.find(p => p.id === project.id)!;
+  }
+
+  async updateProject(id: string, updates: Partial<BrainProject>): Promise<BrainProject> {
+    let updated: BrainProject | undefined;
+    await this.store.modify('projects', DEFAULT_PROJECTS, (file) => {
+      const idx = file.projects.findIndex(p => p.id === id);
+      if (idx === -1) throw new Error(`Project '${id}' not found`);
+      const projects = [...file.projects];
+      updated = { ...projects[idx]!, ...updates, id, updated: today() } as BrainProject;
+      projects[idx] = updated;
+      return { ...file, projects };
+    });
+    return updated!;
+  }
+
+  // === Events ===
+
+  async getEvents(filters: BrainEventFilters = {}): Promise<BrainEvent[]> {
+    const file = await this.store.read('events', DEFAULT_EVENTS);
+    const filtered = file.events.filter(e => matchesFilter(e, filters));
+    filtered.sort((a, b) => a.date.localeCompare(b.date) || (a.time ?? '').localeCompare(b.time ?? ''));
+    return applyLimit(filtered, filters.limit);
+  }
+
+  async getEvent(id: string): Promise<BrainEvent | null> {
+    const file = await this.store.read('events', DEFAULT_EVENTS);
+    return file.events.find(e => e.id === id) ?? null;
+  }
+
+  async addEvent(event: BrainEvent): Promise<BrainEvent> {
+    const result = await this.store.modify('events', DEFAULT_EVENTS, (file) => {
+      if (file.events.some(e => e.id === event.id)) {
+        throw new Error(`Event '${event.id}' already exists`);
+      }
+      return { ...file, events: [...file.events, event] };
+    });
+    return result.events.find(e => e.id === event.id)!;
+  }
+
+  async updateEvent(id: string, updates: Partial<BrainEvent>): Promise<BrainEvent> {
+    let updated: BrainEvent | undefined;
+    await this.store.modify('events', DEFAULT_EVENTS, (file) => {
+      const idx = file.events.findIndex(e => e.id === id);
+      if (idx === -1) throw new Error(`Event '${id}' not found`);
+      const events = [...file.events];
+      updated = { ...events[idx]!, ...updates, id } as BrainEvent;
+      events[idx] = updated;
+      return { ...file, events };
+    });
+    return updated!;
+  }
+
+  // === Agents ===
+
+  async getAgents(filters: { status?: string; project?: string } = {}): Promise<BrainAgent[]> {
+    const file = await this.store.read('agents', DEFAULT_AGENTS);
+    return file.agents.filter(a => matchesFilter(a, filters));
+  }
+
+  async updateAgent(id: string, updates: Partial<BrainAgent>): Promise<BrainAgent> {
+    let updated: BrainAgent | undefined;
+    await this.store.modify('agents', DEFAULT_AGENTS, (file) => {
+      const idx = file.agents.findIndex(a => a.id === id);
+      if (idx === -1) {
+        // Auto-create agent entries
+        updated = { id, project: '', status: 'active', updated: new Date().toISOString(), ...updates } as BrainAgent;
+        return { ...file, agents: [...file.agents, updated] };
+      }
+      const agents = [...file.agents];
+      updated = { ...agents[idx]!, ...updates, id, updated: new Date().toISOString() } as BrainAgent;
+      agents[idx] = updated;
+      return { ...file, agents };
+    });
+    return updated!;
+  }
+
+  // === Tickets ===
+
+  async getTickets(filters: { status?: number; priority?: number; limit?: number } = {}): Promise<BrainTicket[]> {
+    const file = await this.store.read('tickets', DEFAULT_TICKETS);
+    let filtered = file.tickets;
+    if (filters.status !== undefined) filtered = filtered.filter(t => t.status === filters.status);
+    if (filters.priority !== undefined) filtered = filtered.filter(t => t.priority === filters.priority);
+    return applyLimit(filtered, filters.limit);
+  }
+
+  // === Appreciations ===
+
+  async getAppreciations(): Promise<BrainAppreciation[]> {
+    const file = await this.store.read('appreciations', DEFAULT_APPRECIATIONS);
+    return file.appreciations;
+  }
+
+  async addAppreciation(appreciation: BrainAppreciation): Promise<BrainAppreciation> {
+    await this.store.modify('appreciations', DEFAULT_APPRECIATIONS, (file) => ({
+      ...file,
+      appreciations: [...file.appreciations, appreciation],
+    }));
+    return appreciation;
+  }
+
+  // === Missions ===
+
+  async getMissions(filters: BrainMissionFilters = {}): Promise<BrainMission[]> {
+    const file = await this.store.read('missions', DEFAULT_MISSIONS);
+    const filtered = file.missions.filter(m => matchesFilter(m, filters));
+    return applyLimit(filtered, filters.limit);
+  }
+
+  async getMission(id: string): Promise<BrainMission | null> {
+    const file = await this.store.read('missions', DEFAULT_MISSIONS);
+    return file.missions.find(m => m.id === id) ?? null;
+  }
+
+  async addMission(mission: BrainMission): Promise<BrainMission> {
+    const result = await this.store.modify('missions', DEFAULT_MISSIONS, (file) => {
+      if (file.missions.some(m => m.id === mission.id)) {
+        throw new Error(`Mission '${mission.id}' already exists`);
+      }
+      return { ...file, missions: [...file.missions, mission] };
+    });
+    return result.missions.find(m => m.id === mission.id)!;
+  }
+
+  async updateMission(id: string, updates: Partial<BrainMission>): Promise<BrainMission> {
+    let updated: BrainMission | undefined;
+    await this.store.modify('missions', DEFAULT_MISSIONS, (file) => {
+      const idx = file.missions.findIndex(m => m.id === id);
+      if (idx === -1) throw new Error(`Mission '${id}' not found`);
+      const missions = [...file.missions];
+      updated = { ...missions[idx]!, ...updates, id, updated: today() } as BrainMission;
+      missions[idx] = updated;
+      return { ...file, missions };
+    });
+    return updated!;
+  }
+
+  async getMissionSummary(id: string): Promise<BrainMissionSummary | null> {
+    const mission = await this.getMission(id);
+    if (!mission) return null;
+
+    const tasks = await this.getMissionTasks({ mission_id: id });
+    const completed = tasks.filter(t => t.status === 'done');
+    const completedIds = new Set(completed.map(t => t.id));
+
+    const nextAvailable = tasks.filter(t =>
+      t.status !== 'done' && t.status !== 'cancelled' && t.status !== 'blocked'
+      && t.dependencies.every(dep => completedIds.has(dep))
+      && !t.assigned_to,
+    );
+
+    const blockedTasks = tasks.filter(t =>
+      t.status === 'blocked'
+      || (t.status !== 'done' && t.status !== 'cancelled'
+        && !t.dependencies.every(dep => completedIds.has(dep))),
+    );
+
+    return {
+      ...mission,
+      task_count: tasks.length,
+      completed_count: completed.length,
+      progress: tasks.length > 0 ? Math.round((completed.length / tasks.length) * 100) : 0,
+      next_available: nextAvailable,
+      blocked_tasks: blockedTasks,
+    };
+  }
+
+  // === Mission Tasks ===
+
+  async getMissionTasks(filters: BrainMissionTaskFilters): Promise<BrainMissionTask[]> {
+    const file = await this.store.read('mission_tasks', DEFAULT_MISSION_TASKS);
+    const filtered = file.mission_tasks.filter(t => matchesFilter(t, filters));
+    filtered.sort((a, b) => a.order - b.order);
+    return filtered;
+  }
+
+  async addMissionTask(task: BrainMissionTask): Promise<BrainMissionTask> {
+    const result = await this.store.modify('mission_tasks', DEFAULT_MISSION_TASKS, (file) => {
+      if (file.mission_tasks.some(t => t.id === task.id && t.mission_id === task.mission_id)) {
+        throw new Error(`Mission task '${task.id}' already exists in mission '${task.mission_id}'`);
+      }
+      return { ...file, mission_tasks: [...file.mission_tasks, task] };
+    });
+    return result.mission_tasks.find(t => t.id === task.id && t.mission_id === task.mission_id)!;
+  }
+
+  async updateMissionTask(missionId: string, taskId: string, updates: Partial<BrainMissionTask>): Promise<BrainMissionTask> {
+    let updated: BrainMissionTask | undefined;
+    await this.store.modify('mission_tasks', DEFAULT_MISSION_TASKS, (file) => {
+      const idx = file.mission_tasks.findIndex(t => t.id === taskId && t.mission_id === missionId);
+      if (idx === -1) throw new Error(`Mission task '${taskId}' not found in mission '${missionId}'`);
+      const tasks = [...file.mission_tasks];
+      updated = { ...tasks[idx]!, ...updates, id: taskId, mission_id: missionId, updated: today() } as BrainMissionTask;
+      if (updates.status === 'done' && !updated.completed_at) {
+        updated = { ...updated, completed_at: new Date().toISOString() };
+      }
+      tasks[idx] = updated;
+      return { ...file, mission_tasks: tasks };
+    });
+    return updated!;
+  }
+
+  // === Computed: Today ===
+
+  async getToday(date?: string): Promise<BrainTodaySummary> {
+    const d = date ?? today();
+    const weekFromNow = new Date(Date.now() + 7 * 86400000).toISOString().slice(0, 10);
+    const staleCutoff = new Date(Date.now() - 7 * 86400000).toISOString().slice(0, 10);
+
+    const [tasks, projects, events, agents, missions] = await Promise.all([
+      this.getTasks(),
+      this.getProjects(),
+      this.getEvents(),
+      this.getAgents(),
+      this.getMissions({ status: 'active' }),
+    ]);
+
+    const activeTasks = tasks.filter(t => t.status !== 'done' && t.status !== 'cancelled');
+    const eventsToday = events.filter(e => e.date === d);
+    const eventsUpcoming = events.filter(e => e.date > d && e.date <= weekFromNow);
+    const tasksNearTerm = activeTasks.filter(t => t.due && t.due >= d && t.due <= weekFromNow);
+    const tasksBlocked = activeTasks.filter(t => t.status === 'blocked');
+    const tasksStale = activeTasks.filter(t => t.status === 'in-progress' && t.updated < staleCutoff);
+    const tasksAlmostDone = activeTasks.filter(t => t.progress != null && t.progress >= 80);
+
+    const missionSummaries: BrainMissionSummary[] = [];
+    for (const m of missions) {
+      const summary = await this.getMissionSummary(m.id);
+      if (summary) missionSummaries.push(summary);
+    }
+
+    const tasksByStatus: Record<string, number> = {};
+    const tasksByDomain: Record<string, number> = {};
+    for (const t of tasks) {
+      tasksByStatus[t.status] = (tasksByStatus[t.status] ?? 0) + 1;
+      tasksByDomain[t.domain] = (tasksByDomain[t.domain] ?? 0) + 1;
+    }
+    const projectsByStatus: Record<string, number> = {};
+    for (const p of projects) {
+      projectsByStatus[p.status] = (projectsByStatus[p.status] ?? 0) + 1;
+    }
+
+    return {
+      date: d,
+      events_today: eventsToday,
+      events_upcoming: eventsUpcoming,
+      tasks_near_term: tasksNearTerm,
+      tasks_blocked: tasksBlocked,
+      tasks_stale: tasksStale,
+      tasks_almost_done: tasksAlmostDone,
+      active_missions: missionSummaries,
+      stats: {
+        tasks: tasks.length,
+        projects: projects.length,
+        events: events.length,
+        agents: agents.length,
+        tickets: (await this.getTickets()).length,
+        missions: (await this.getMissions()).length,
+        tasks_by_status: tasksByStatus,
+        tasks_by_domain: tasksByDomain,
+        projects_by_status: projectsByStatus,
+      },
+    };
+  }
+
+  // === Computed: Stale ===
+
+  async getStale(days: number = 7): Promise<BrainStaleReport> {
+    const cutoff = new Date(Date.now() - days * 86400000).toISOString().slice(0, 10);
+    const tasks = await this.getTasks();
+    const projects = await this.getProjects();
+
+    return {
+      days,
+      tasks: tasks.filter(t => t.status === 'in-progress' && t.updated < cutoff),
+      projects: projects.filter(p => p.status === 'active' && p.updated < cutoff),
+    };
+  }
+
+  // === Computed: Stats ===
+
+  async getStats(): Promise<BrainStats> {
+    const [tasks, projects, events, agents, tickets, missions] = await Promise.all([
+      this.getTasks(),
+      this.getProjects(),
+      this.getEvents(),
+      this.getAgents(),
+      this.getTickets(),
+      this.getMissions(),
+    ]);
+
+    const tasksByStatus: Record<string, number> = {};
+    const tasksByDomain: Record<string, number> = {};
+    for (const t of tasks) {
+      tasksByStatus[t.status] = (tasksByStatus[t.status] ?? 0) + 1;
+      tasksByDomain[t.domain] = (tasksByDomain[t.domain] ?? 0) + 1;
+    }
+    const projectsByStatus: Record<string, number> = {};
+    for (const p of projects) {
+      projectsByStatus[p.status] = (projectsByStatus[p.status] ?? 0) + 1;
+    }
+
+    return {
+      tasks: tasks.length,
+      projects: projects.length,
+      events: events.length,
+      agents: agents.length,
+      tickets: tickets.length,
+      missions: missions.length,
+      tasks_by_status: tasksByStatus,
+      tasks_by_domain: tasksByDomain,
+      projects_by_status: projectsByStatus,
+    };
+  }
+
+  // === Computed: Search ===
+
+  async search(query: string, collection?: string): Promise<BrainSearchResult[]> {
+    const q = query.toLowerCase();
+    const results: BrainSearchResult[] = [];
+
+    const searchIn = (items: Array<{ id: string; title: string; notes?: string | null }>, collectionName: string) => {
+      for (const item of items) {
+        const titleMatch = item.title.toLowerCase().includes(q);
+        const notesMatch = item.notes?.toLowerCase().includes(q);
+        if (titleMatch || notesMatch) {
+          results.push({
+            collection: collectionName,
+            id: item.id,
+            title: item.title,
+            match_context: titleMatch ? item.title : (item.notes?.substring(0, 200) ?? ''),
+            score: titleMatch ? 1.0 : 0.5,
+          });
+        }
+      }
+    };
+
+    if (!collection || collection === 'tasks') searchIn(await this.getTasks(), 'tasks');
+    if (!collection || collection === 'projects') {
+      const projects = await this.getProjects();
+      for (const p of projects) {
+        const titleMatch = p.name.toLowerCase().includes(q);
+        const notesMatch = p.notes?.toLowerCase().includes(q);
+        if (titleMatch || notesMatch) {
+          results.push({
+            collection: 'projects',
+            id: p.id,
+            title: p.name,
+            match_context: titleMatch ? p.name : (p.notes?.substring(0, 200) ?? ''),
+            score: titleMatch ? 1.0 : 0.5,
+          });
+        }
+      }
+    }
+    if (!collection || collection === 'events') searchIn(await this.getEvents(), 'events');
+    if (!collection || collection === 'missions') searchIn(await this.getMissions(), 'missions');
+
+    results.sort((a, b) => b.score - a.score);
+    return results;
+  }
+
+  // === Computed: Audit ===
+
+  async audit(): Promise<BrainAuditResult> {
+    const tasks = await this.getTasks();
+    const projects = await this.getProjects();
+    const taskIds = new Set(tasks.map(t => t.id));
+    const projectIds = new Set(projects.map(p => p.id));
+    const allIds = new Set([...taskIds, ...projectIds]);
+
+    const orphanRefs: string[] = [];
+    const brokenDependencies: string[] = [];
+    const missingRequiredFields: string[] = [];
+    const duplicateIds: string[] = [];
+
+    // Check for duplicate task IDs
+    const seenTaskIds = new Set<string>();
+    for (const t of tasks) {
+      if (seenTaskIds.has(t.id)) duplicateIds.push(`task:${t.id}`);
+      seenTaskIds.add(t.id);
+    }
+
+    // Check task references
+    for (const t of tasks) {
+      if (t.project && !projectIds.has(t.project)) {
+        orphanRefs.push(`task:${t.id} -> project:${t.project}`);
+      }
+      for (const dep of t.blocked_by ?? []) {
+        if (!allIds.has(dep)) brokenDependencies.push(`task:${t.id} blocked_by:${dep}`);
+      }
+      for (const dep of t.blocks ?? []) {
+        if (!allIds.has(dep)) brokenDependencies.push(`task:${t.id} blocks:${dep}`);
+      }
+      if (!t.title) missingRequiredFields.push(`task:${t.id} missing title`);
+    }
+
+    return { orphan_refs: orphanRefs, broken_dependencies: brokenDependencies, missing_required_fields: missingRequiredFields, duplicate_ids: duplicateIds };
+  }
+}

packages/brain/src/storage/json-store.ts

@@ -0,0 +1,156 @@
+import { readFile, writeFile, mkdir } from 'node:fs/promises';
+import { existsSync } from 'node:fs';
+import { join, dirname } from 'node:path';
+import * as lockfile from 'proper-lockfile';
+
+export interface JsonStoreOptions {
+  dataDir: string;
+}
+
+const LOCK_OPTIONS = { retries: { retries: 5, minTimeout: 100 } };
+
+/**
+ * JSON file-backed storage with file locking for concurrent access.
+ * One file per collection. In-memory cache for fast reads.
+ *
+ * Known constraint: Cache TTL means multi-instance deployments against
+ * the same data directory may see stale reads for up to CACHE_TTL_MS.
+ * Single-instance is the supported topology for Phase 1.
+ */
+export class JsonStore {
+  private readonly dataDir: string;
+  private readonly cache = new Map<string, { data: unknown; loadedAt: number }>();
+  private static readonly CACHE_TTL_MS = 5_000;
+
+  constructor(options: JsonStoreOptions) {
+    this.dataDir = options.dataDir;
+  }
+
+  async init(): Promise<void> {
+    if (!existsSync(this.dataDir)) {
+      await mkdir(this.dataDir, { recursive: true });
+    }
+  }
+
+  private filePath(collection: string): string {
+    return join(this.dataDir, `${collection}.json`);
+  }
+
+  private isCacheValid(collection: string): boolean {
+    const cached = this.cache.get(collection);
+    if (!cached) return false;
+    return Date.now() - cached.loadedAt < JsonStore.CACHE_TTL_MS;
+  }
+
+  /**
+   * Ensure a file exists for locking. Uses a separate lock on the
+   * directory to prevent race conditions during file creation.
+   */
+  private async ensureFile(path: string, defaultContent: string): Promise<void> {
+    const dir = dirname(path);
+    if (!existsSync(dir)) {
+      await mkdir(dir, { recursive: true });
+    }
+    if (!existsSync(path)) {
+      // Lock the directory to serialize file creation
+      let releaseDir: (() => Promise<void>) | undefined;
+      try {
+        releaseDir = await lockfile.lock(dir, LOCK_OPTIONS);
+        // Double-check after acquiring lock
+        if (!existsSync(path)) {
+          await writeFile(path, defaultContent, 'utf-8');
+        }
+      } finally {
+        if (releaseDir) await releaseDir();
+      }
+    }
+  }
+
+  /**
+   * Read a collection file. Returns parsed JSON or default if file doesn't exist.
+   */
+  async read<T>(collection: string, defaultValue: T): Promise<T> {
+    if (this.isCacheValid(collection)) {
+      return this.cache.get(collection)!.data as T;
+    }
+
+    const path = this.filePath(collection);
+    if (!existsSync(path)) {
+      this.cache.set(collection, { data: defaultValue, loadedAt: Date.now() });
+      return defaultValue;
+    }
+
+    try {
+      const raw = await readFile(path, 'utf-8');
+      const data = JSON.parse(raw) as T;
+      this.cache.set(collection, { data, loadedAt: Date.now() });
+      return data;
+    } catch {
+      return defaultValue;
+    }
+  }
+
+  /**
+   * Write a collection file with file locking.
+   */
+  async write(collection: string, data: unknown): Promise<void> {
+    const path = this.filePath(collection);
+    await this.ensureFile(path, '{}');
+
+    let release: (() => Promise<void>) | undefined;
+    try {
+      release = await lockfile.lock(path, LOCK_OPTIONS);
+      await writeFile(path, JSON.stringify(data, null, 2) + '\n', 'utf-8');
+      this.cache.set(collection, { data, loadedAt: Date.now() });
+    } finally {
+      if (release) await release();
+    }
+  }
+
+  /**
+   * Read-modify-write with file locking. The modifier function receives
+   * the current data and returns the updated data.
+   */
+  async modify<T>(
+    collection: string,
+    defaultValue: T,
+    modifier: (current: T) => T | Promise<T>,
+  ): Promise<T> {
+    const path = this.filePath(collection);
+    await this.ensureFile(path, JSON.stringify(defaultValue, null, 2) + '\n');
+
+    let release: (() => Promise<void>) | undefined;
+    try {
+      release = await lockfile.lock(path, LOCK_OPTIONS);
+
+      let current: T;
+      try {
+        const raw = await readFile(path, 'utf-8');
+        current = JSON.parse(raw) as T;
+      } catch {
+        current = defaultValue;
+      }
+
+      const updated = await modifier(current);
+      await writeFile(path, JSON.stringify(updated, null, 2) + '\n', 'utf-8');
+      this.cache.set(collection, { data: updated, loadedAt: Date.now() });
+      return updated;
+    } finally {
+      if (release) await release();
+    }
+  }
+
+  /**
+   * Invalidate cache for a collection.
+   */
+  invalidate(collection: string): void {
+    this.cache.delete(collection);
+  }
+
+  /**
+   * Invalidate all cached data.
+   */
+  invalidateAll(): void {
+    this.cache.clear();
+  }
+}

packages/brain/tsconfig.json

@@ -0,0 +1,8 @@
+{
+  "extends": "../../tsconfig.base.json",
+  "compilerOptions": {
+    "rootDir": "src",
+    "outDir": "dist"
+  },
+  "include": ["src"]
+}

packages/cli/bin/mosaic.ts

@@ -0,0 +1,5 @@
+#!/usr/bin/env node
+
+import { rootCommand } from '../src/root-command.js';
+
+rootCommand.parseAsync(process.argv);

packages/cli/eslint.config.js

@@ -0,0 +1,15 @@
+import tsParser from '@typescript-eslint/parser';
+
+export default [
+  {
+    files: ['src/**/*.ts', 'bin/**/*.ts', 'tests/**/*.ts'],
+    languageOptions: {
+      parser: tsParser,
+      parserOptions: {
+        ecmaVersion: 'latest',
+        sourceType: 'module',
+      },
+    },
+    rules: {},
+  },
+];

packages/cli/package.json

@@ -0,0 +1,33 @@
+{
+  "name": "@mosaic/cli",
+  "version": "0.1.0",
+  "type": "module",
+  "description": "Mosaic unified CLI — the mosaic command",
+  "bin": {
+    "mosaic": "./dist/bin/mosaic.js"
+  },
+  "scripts": {
+    "build": "tsc -p tsconfig.json",
+    "typecheck": "tsc --noEmit",
+    "lint": "eslint src/",
+    "test": "vitest run"
+  },
+  "dependencies": {
+    "@mosaic/types": "workspace:*",
+    "@mosaic/coord": "workspace:*",
+    "@mosaic/queue": "workspace:*",
+    "commander": "^13",
+    "picocolors": "^1.1"
+  },
+  "devDependencies": {
+    "@types/node": "^22",
+    "@typescript-eslint/parser": "^8",
+    "eslint": "^9",
+    "typescript": "^5",
+    "vitest": "^2"
+  },
+  "publishConfig": {
+    "registry": "https://git.mosaicstack.dev/api/packages/mosaic/npm",
+    "access": "public"
+  }
+}

packages/cli/src/commands/coord.ts

@@ -0,0 +1,15 @@
+import { Command } from 'commander';
+
+import { buildCoordCli } from '@mosaic/coord/dist/cli.js';
+
+const COMMAND_NAME = 'coord';
+
+export function registerCoordCommand(program: Command): void {
+  const coordCommand = buildCoordCli().commands.find((command) => command.name() === COMMAND_NAME);
+
+  if (coordCommand === undefined) {
+    throw new Error('Expected @mosaic/coord to expose a "coord" command.');
+  }
+
+  program.addCommand(coordCommand);
+}

packages/cli/src/commands/prdy.ts

@@ -0,0 +1,13 @@
+import { Command } from 'commander';
+import pc from 'picocolors';
+
+// TODO(wave3): Replace this temporary shim once @mosaic/prdy lands in main.
+export function registerPrdyCommand(program: Command): void {
+  program
+    .command('prdy')
+    .description('PRD workflow commands')
+    .action(() => {
+      console.error(pc.yellow('@mosaic/prdy CLI is not available in this workspace yet.'));
+      process.exitCode = 1;
+    });
+}

packages/cli/src/commands/quality-rails.ts

@@ -0,0 +1,15 @@
+import { Command } from 'commander';
+import pc from 'picocolors';
+
+// TODO(wave3): Replace this temporary shim once @mosaic/quality-rails lands in main.
+export function registerQualityRailsCommand(program: Command): void {
+  program
+    .command('quality-rails')
+    .description('Quality rail commands')
+    .action(() => {
+      console.error(
+        pc.yellow('@mosaic/quality-rails CLI is not available in this workspace yet.'),
+      );
+      process.exitCode = 1;
+    });
+}

packages/cli/src/commands/queue.ts

@@ -0,0 +1,15 @@
+import { Command } from 'commander';
+
+import { buildQueueCli } from '@mosaic/queue';
+
+const COMMAND_NAME = 'queue';
+
+export function registerQueueCommand(program: Command): void {
+  const queueCommand = buildQueueCli().commands.find((command) => command.name() === COMMAND_NAME);
+
+  if (queueCommand === undefined) {
+    throw new Error('Expected @mosaic/queue to expose a "queue" command.');
+  }
+
+  program.addCommand(queueCommand);
+}

packages/cli/src/index.ts

@@ -0,0 +1 @@
+export { rootCommand } from './root-command.js';

packages/cli/src/root-command.ts

@@ -0,0 +1,17 @@
+import { Command } from 'commander';
+
+import { registerCoordCommand } from './commands/coord.js';
+import { registerPrdyCommand } from './commands/prdy.js';
+import { registerQualityRailsCommand } from './commands/quality-rails.js';
+import { registerQueueCommand } from './commands/queue.js';
+import { VERSION } from './version.js';
+
+export const rootCommand = new Command()
+  .name('mosaic')
+  .version(VERSION)
+  .description('Mosaic — AI agent orchestration platform');
+
+registerCoordCommand(rootCommand);
+registerPrdyCommand(rootCommand);
+registerQueueCommand(rootCommand);
+registerQualityRailsCommand(rootCommand);

packages/cli/src/version.ts

@@ -0,0 +1 @@
+export const VERSION = '0.1.0';

packages/cli/tests/root-command.test.ts

@@ -0,0 +1,18 @@
+import { describe, expect, it } from 'vitest';
+
+import { rootCommand } from '../src/root-command.js';
+
+describe('rootCommand', () => {
+  it('registers all top-level subcommand groups', () => {
+    const registeredSubcommands = rootCommand.commands
+      .map((command) => command.name())
+      .sort((left, right) => left.localeCompare(right));
+
+    expect(registeredSubcommands).toEqual([
+      'coord',
+      'prdy',
+      'quality-rails',
+      'queue',
+    ]);
+  });
+});

packages/cli/tsconfig.json

@@ -0,0 +1,5 @@
+{
+  "extends": "../../tsconfig.base.json",
+  "compilerOptions": { "outDir": "dist", "rootDir": "." },
+  "include": ["src", "bin"]
+}

packages/coord/package.json

@@ -0,0 +1,24 @@
+{
+  "name": "@mosaic/coord",
+  "version": "0.1.0",
+  "type": "module",
+  "description": "Mosaic mission coordination — TypeScript rewrite of mosaic coord",
+  "scripts": {
+    "build": "tsc -p tsconfig.json",
+    "typecheck": "tsc --noEmit",
+    "lint": "echo 'ok'",
+    "test": "vitest run"
+  },
+  "dependencies": {
+    "@mosaic/queue": "workspace:*",
+    "@mosaic/types": "workspace:*",
+    "commander": "^13",
+    "js-yaml": "^4"
+  },
+  "devDependencies": {
+    "@types/js-yaml": "^4",
+    "@types/node": "^22",
+    "typescript": "^5",
+    "vitest": "^2"
+  }
+}

packages/coord/src/cli.ts

@@ -0,0 +1,155 @@
+import { Command } from 'commander';
+
+import { createMission, loadMission } from './mission.js';
+import { runTask, resumeTask } from './runner.js';
+import { getMissionStatus } from './status.js';
+import type { MissionStatusSummary } from './types.js';
+
+interface InitCommandOptions {
+  readonly name: string;
+  readonly project?: string;
+  readonly prefix?: string;
+  readonly milestones?: string;
+  readonly qualityGates?: string;
+  readonly version?: string;
+  readonly description?: string;
+  readonly force?: boolean;
+}
+
+interface RunCommandOptions {
+  readonly project: string;
+  readonly task: string;
+  readonly runtime?: 'claude' | 'codex';
+  readonly print?: boolean;
+}
+
+interface StatusCommandOptions {
+  readonly project: string;
+  readonly format?: 'json' | 'table';
+}
+
+function parseMilestones(value: string | undefined): string[] {
+  if (value === undefined || value.trim().length === 0) {
+    return [];
+  }
+
+  return value
+    .split(',')
+    .map((entry) => entry.trim())
+    .filter((entry) => entry.length > 0);
+}
+
+function renderStatusTable(status: MissionStatusSummary): string {
+  const lines = [
+    `Mission: ${status.mission.name} (${status.mission.id})`,
+    `Status: ${status.mission.status}`,
+    `Project: ${status.mission.projectPath}`,
+    `Milestones: ${status.milestones.completed}/${status.milestones.total} completed`,
+    `Tasks: total=${status.tasks.total}, done=${status.tasks.done}, in-progress=${status.tasks.inProgress}, pending=${status.tasks.pending}, blocked=${status.tasks.blocked}, cancelled=${status.tasks.cancelled}`,
+    `Next task: ${status.nextTaskId ?? '—'}`,
+    `Active session: ${status.activeSession?.sessionId ?? 'none'}`,
+  ];
+
+  return lines.join('\n');
+}
+
+export function buildCoordCli(): Command {
+  const program = new Command();
+  program
+    .name('mosaic')
+    .description('Mosaic CLI')
+    .exitOverride();
+
+  const coord = program.command('coord').description('Mission coordination commands');
+
+  coord
+    .command('init')
+    .description('Initialize orchestrator mission state')
+    .requiredOption('--name <name>', 'Mission name')
+    .option('--project <path>', 'Project path')
+    .option('--prefix <prefix>', 'Task prefix')
+    .option('--milestones <comma-separated>', 'Milestone names')
+    .option('--quality-gates <command>', 'Quality gate command')
+    .option('--version <semver>', 'Milestone version')
+    .option('--description <description>', 'Mission description')
+    .option('--force', 'Overwrite active mission')
+    .action(async (options: InitCommandOptions) => {
+      const mission = await createMission({
+        name: options.name,
+        projectPath: options.project,
+        prefix: options.prefix,
+        milestones: parseMilestones(options.milestones),
+        qualityGates: options.qualityGates,
+        version: options.version,
+        description: options.description,
+        force: options.force,
+      });
+
+      console.log(
+        JSON.stringify(
+          {
+            ok: true,
+            missionId: mission.id,
+            projectPath: mission.projectPath,
+          },
+          null,
+          2,
+        ),
+      );
+    });
+
+  coord
+    .command('run')
+    .description('Run a mission task')
+    .requiredOption('--project <path>', 'Project path')
+    .requiredOption('--task <id>', 'Task id')
+    .option('--runtime <runtime>', 'Runtime (claude|codex)')
+    .option('--print', 'Print launch command only')
+    .action(async (options: RunCommandOptions) => {
+      const mission = await loadMission(options.project);
+      const run = await runTask(mission, options.task, {
+        runtime: options.runtime,
+        mode: options.print === true ? 'print-only' : 'interactive',
+      });
+      console.log(JSON.stringify(run, null, 2));
+    });
+
+  coord
+    .command('resume')
+    .description('Resume a mission task after stale/dead session lock')
+    .requiredOption('--project <path>', 'Project path')
+    .requiredOption('--task <id>', 'Task id')
+    .option('--runtime <runtime>', 'Runtime (claude|codex)')
+    .option('--print', 'Print launch command only')
+    .action(async (options: RunCommandOptions) => {
+      const mission = await loadMission(options.project);
+      const run = await resumeTask(mission, options.task, {
+        runtime: options.runtime,
+        mode: options.print === true ? 'print-only' : 'interactive',
+      });
+      console.log(JSON.stringify(run, null, 2));
+    });
+
+  coord
+    .command('status')
+    .description('Show mission status')
+    .requiredOption('--project <path>', 'Project path')
+    .option('--format <format>', 'Output format (table|json)', 'table')
+    .action(async (options: StatusCommandOptions) => {
+      const mission = await loadMission(options.project);
+      const status = await getMissionStatus(mission);
+
+      if (options.format === 'json') {
+        console.log(JSON.stringify(status, null, 2));
+      } else {
+        console.log(renderStatusTable(status));
+      }
+    });
+
+  return program;
+}
+
+export async function runCoordCli(argv: readonly string[] = process.argv): Promise<void> {
+  const program = buildCoordCli();
+  await program.parseAsync(argv);
+}

packages/coord/src/index.ts

@@ -0,0 +1,34 @@
+export {
+  createMission,
+  loadMission,
+  missionFilePath,
+  saveMission,
+} from './mission.js';
+export {
+  parseTasksFile,
+  updateTaskStatus,
+  writeTasksFile,
+} from './tasks-file.js';
+export { runTask, resumeTask } from './runner.js';
+export { getMissionStatus, getTaskStatus } from './status.js';
+export { buildCoordCli, runCoordCli } from './cli.js';
+export type {
+  CreateMissionOptions,
+  Mission,
+  MissionMilestone,
+  MissionRuntime,
+  MissionSession,
+  MissionStatus,
+  MissionStatusSummary,
+  MissionTask,
+  NextTaskCapsule,
+  RunTaskOptions,
+  TaskDetail,
+  TaskRun,
+  TaskStatus,
+} from './types.js';
+export {
+  isMissionStatus,
+  isTaskStatus,
+  normalizeTaskStatus,
+} from './types.js';

packages/coord/src/mission.ts

@@ -0,0 +1,415 @@
+import { promises as fs } from 'node:fs';
+import path from 'node:path';
+
+import { writeTasksFile } from './tasks-file.js';
+import type {
+  CreateMissionOptions,
+  Mission,
+  MissionMilestone,
+  MissionSession,
+} from './types.js';
+import { isMissionStatus } from './types.js';
+
+const DEFAULT_ORCHESTRATOR_DIR = '.mosaic/orchestrator';
+const DEFAULT_MISSION_FILE = 'mission.json';
+const DEFAULT_TASKS_FILE = 'docs/TASKS.md';
+const DEFAULT_MANIFEST_FILE = 'docs/MISSION-MANIFEST.md';
+const DEFAULT_SCRATCHPAD_DIR = 'docs/scratchpads';
+const DEFAULT_MILESTONE_VERSION = '0.0.1';
+
+function asRecord(value: unknown): Record<string, unknown> {
+  if (typeof value === 'object' && value !== null) {
+    return value as Record<string, unknown>;
+  }
+
+  return {};
+}
+
+function readString(
+  source: Record<string, unknown>,
+  ...keys: readonly string[]
+): string | undefined {
+  for (const key of keys) {
+    const value = source[key];
+    if (typeof value === 'string') {
+      const trimmed = value.trim();
+      if (trimmed.length > 0) {
+        return trimmed;
+      }
+    }
+  }
+
+  return undefined;
+}
+
+function readNumber(
+  source: Record<string, unknown>,
+  ...keys: readonly string[]
+): number | undefined {
+  for (const key of keys) {
+    const value = source[key];
+    if (typeof value === 'number' && Number.isFinite(value)) {
+      return value;
+    }
+  }
+
+  return undefined;
+}
+
+function normalizeMilestoneStatus(status: string | undefined): MissionMilestone['status'] {
+  if (status === 'completed') {
+    return 'completed';
+  }
+
+  if (status === 'in-progress') {
+    return 'in-progress';
+  }
+
+  if (status === 'blocked') {
+    return 'blocked';
+  }
+
+  return 'pending';
+}
+
+function normalizeSessionRuntime(runtime: string | undefined): MissionSession['runtime'] {
+  if (runtime === 'claude' || runtime === 'codex' || runtime === 'unknown') {
+    return runtime;
+  }
+
+  return 'unknown';
+}
+
+function normalizeEndedReason(reason: string | undefined): MissionSession['endedReason'] {
+  if (
+    reason === 'completed' ||
+    reason === 'paused' ||
+    reason === 'crashed' ||
+    reason === 'killed' ||
+    reason === 'unknown'
+  ) {
+    return reason;
+  }
+
+  return undefined;
+}
+
+function normalizeMission(raw: unknown, resolvedProjectPath: string): Mission {
+  const source = asRecord(raw);
+
+  const id = readString(source, 'id', 'mission_id') ?? 'mission';
+  const name = readString(source, 'name') ?? 'Unnamed Mission';
+  const statusCandidate = readString(source, 'status') ?? 'inactive';
+  const status = isMissionStatus(statusCandidate) ? statusCandidate : 'inactive';
+
+  const mission: Mission = {
+    schemaVersion: 1,
+    id,
+    name,
+    description: readString(source, 'description'),
+    projectPath:
+      readString(source, 'projectPath', 'project_path') ?? resolvedProjectPath,
+    createdAt:
+      readString(source, 'createdAt', 'created_at') ?? new Date().toISOString(),
+    status,
+    tasksFile: readString(source, 'tasksFile', 'tasks_file') ?? DEFAULT_TASKS_FILE,
+    manifestFile:
+      readString(source, 'manifestFile', 'manifest_file') ?? DEFAULT_MANIFEST_FILE,
+    scratchpadFile:
+      readString(source, 'scratchpadFile', 'scratchpad_file') ??
+      `${DEFAULT_SCRATCHPAD_DIR}/${id}.md`,
+    orchestratorDir:
+      readString(source, 'orchestratorDir', 'orchestrator_dir') ??
+      DEFAULT_ORCHESTRATOR_DIR,
+    taskPrefix: readString(source, 'taskPrefix', 'task_prefix'),
+    qualityGates: readString(source, 'qualityGates', 'quality_gates'),
+    milestoneVersion: readString(source, 'milestoneVersion', 'milestone_version'),
+    milestones: [],
+    sessions: [],
+  };
+
+  const milestonesRaw = Array.isArray(source.milestones) ? source.milestones : [];
+  mission.milestones = milestonesRaw.map((milestoneValue, index) => {
+    const milestone = asRecord(milestoneValue);
+    return {
+      id: readString(milestone, 'id') ?? `phase-${index + 1}`,
+      name: readString(milestone, 'name') ?? `Phase ${index + 1}`,
+      status: normalizeMilestoneStatus(readString(milestone, 'status')),
+      branch: readString(milestone, 'branch'),
+      issueRef: readString(milestone, 'issueRef', 'issue_ref'),
+      startedAt: readString(milestone, 'startedAt', 'started_at'),
+      completedAt: readString(milestone, 'completedAt', 'completed_at'),
+    };
+  });
+
+  const sessionsRaw = Array.isArray(source.sessions) ? source.sessions : [];
+  mission.sessions = sessionsRaw.map((sessionValue, index) => {
+    const session = asRecord(sessionValue);
+    const fallbackSessionId = `sess-${String(index + 1).padStart(3, '0')}`;
+
+    return {
+      sessionId: readString(session, 'sessionId', 'session_id') ?? fallbackSessionId,
+      runtime: normalizeSessionRuntime(readString(session, 'runtime')),
+      pid: readNumber(session, 'pid'),
+      startedAt:
+        readString(session, 'startedAt', 'started_at') ?? mission.createdAt,
+      endedAt: readString(session, 'endedAt', 'ended_at'),
+      endedReason: normalizeEndedReason(
+        readString(session, 'endedReason', 'ended_reason'),
+      ),
+      milestoneId: readString(session, 'milestoneId', 'milestone_id'),
+      lastTaskId: readString(session, 'lastTaskId', 'last_task_id'),
+      durationSeconds: readNumber(session, 'durationSeconds', 'duration_seconds'),
+    };
+  });
+
+  return mission;
+}
+
+function missionIdFromName(name: string): string {
+  const slug = name
+    .toLowerCase()
+    .replace(/[^a-z0-9]+/g, '-')
+    .replace(/^-+|-+$/g, '')
+    .replace(/-{2,}/g, '-');
+  const date = new Date().toISOString().slice(0, 10).replace(/-/g, '');
+  return `${slug || 'mission'}-${date}`;
+}
+
+function toAbsolutePath(basePath: string, targetPath: string): string {
+  if (path.isAbsolute(targetPath)) {
+    return targetPath;
+  }
+
+  return path.join(basePath, targetPath);
+}
+
+function isNodeErrorWithCode(error: unknown, code: string): boolean {
+  return (
+    typeof error === 'object' &&
+    error !== null &&
+    'code' in error &&
+    (error as { code?: string }).code === code
+  );
+}
+
+async function fileExists(filePath: string): Promise<boolean> {
+  try {
+    await fs.access(filePath);
+    return true;
+  } catch (error) {
+    if (isNodeErrorWithCode(error, 'ENOENT')) {
+      return false;
+    }
+    throw error;
+  }
+}
+
+async function writeFileAtomic(filePath: string, content: string): Promise<void> {
+  const directory = path.dirname(filePath);
+  await fs.mkdir(directory, { recursive: true });
+
+  const tempPath = path.join(
+    directory,
+    `.${path.basename(filePath)}.tmp-${process.pid}-${Date.now()}-${Math.random()
+      .toString(16)
+      .slice(2)}`,
+  );
+
+  await fs.writeFile(tempPath, content, 'utf8');
+  await fs.rename(tempPath, filePath);
+}
+
+function renderManifest(mission: Mission): string {
+  const milestoneRows = mission.milestones
+    .map((milestone, index) => {
+      const issue = milestone.issueRef ?? '—';
+      const branch = milestone.branch ?? '—';
+      const started = milestone.startedAt ?? '—';
+      const completed = milestone.completedAt ?? '—';
+      return `| ${index + 1} | ${milestone.id} | ${milestone.name} | ${milestone.status} | ${branch} | ${issue} | ${started} | ${completed} |`;
+    })
+    .join('\n');
+
+  const body = [
+    `# Mission Manifest — ${mission.name}`,
+    '',
+    '> Persistent document tracking full mission scope, status, and session history.',
+    '',
+    '## Mission',
+    '',
+    `**ID:** ${mission.id}`,
+    `**Statement:** ${mission.description ?? ''}`,
+    '**Phase:** Intake',
+    '**Current Milestone:** —',
+    `**Progress:** 0 / ${mission.milestones.length} milestones`,
+    `**Status:** ${mission.status}`,
+    `**Last Updated:** ${new Date().toISOString().replace('T', ' ').replace(/\..+/, ' UTC')}`,
+    '',
+    '## Milestones',
+    '',
+    '| # | ID | Name | Status | Branch | Issue | Started | Completed |',
+    '|---|-----|------|--------|--------|-------|---------|-----------|',
+    milestoneRows,
+    '',
+    '## Session History',
+    '',
+    '| Session | Runtime | Started | Duration | Ended Reason | Last Task |',
+    '|---------|---------|---------|----------|--------------|-----------|',
+    '',
+    `## Scratchpad\n\nPath: \`${mission.scratchpadFile}\``,
+    '',
+  ];
+
+  return body.join('\n');
+}
+
+function renderScratchpad(mission: Mission): string {
+  return [
+    `# Mission Scratchpad — ${mission.name}`,
+    '',
+    '> Append-only log. NEVER delete entries. NEVER overwrite sections.',
+    '',
+    '## Original Mission Prompt',
+    '',
+    '```',
+    '(Paste the mission prompt here on first session)',
+    '```',
+    '',
+    '## Planning Decisions',
+    '',
+    '## Session Log',
+    '',
+    '| Session | Date | Milestone | Tasks Done | Outcome |',
+    '|---------|------|-----------|------------|---------|',
+    '',
+    '## Open Questions',
+    '',
+    '## Corrections',
+    '',
+  ].join('\n');
+}
+
+function buildMissionFromOptions(
+  options: CreateMissionOptions,
+  resolvedProjectPath: string,
+): Mission {
+  const id = missionIdFromName(options.name);
+  const createdAt = new Date().toISOString();
+
+  const milestones = (options.milestones ?? []).map((name, index) => {
+    const cleanName = name.trim();
+    const milestoneName = cleanName.length > 0 ? cleanName : `Phase ${index + 1}`;
+    return {
+      id: `phase-${index + 1}`,
+      name: milestoneName,
+      status: 'pending' as const,
+      branch: milestoneName
+        .toLowerCase()
+        .replace(/[^a-z0-9]+/g, '-')
+        .replace(/^-+|-+$/g, ''),
+      issueRef: undefined,
+      startedAt: undefined,
+      completedAt: undefined,
+    };
+  });
+
+  return {
+    schemaVersion: 1,
+    id,
+    name: options.name,
+    description: options.description,
+    projectPath: resolvedProjectPath,
+    createdAt,
+    status: 'active',
+    tasksFile: DEFAULT_TASKS_FILE,
+    manifestFile: DEFAULT_MANIFEST_FILE,
+    scratchpadFile: `${DEFAULT_SCRATCHPAD_DIR}/${id}.md`,
+    orchestratorDir: DEFAULT_ORCHESTRATOR_DIR,
+    taskPrefix: options.prefix,
+    qualityGates: options.qualityGates,
+    milestoneVersion: options.version ?? DEFAULT_MILESTONE_VERSION,
+    milestones,
+    sessions: [],
+  };
+}
+
+export function missionFilePath(projectPath: string, mission?: Mission): string {
+  const orchestratorDir = mission?.orchestratorDir ?? DEFAULT_ORCHESTRATOR_DIR;
+  const baseDir = path.isAbsolute(orchestratorDir)
+    ? orchestratorDir
+    : path.join(projectPath, orchestratorDir);
+  return path.join(baseDir, DEFAULT_MISSION_FILE);
+}
+
+export async function saveMission(mission: Mission): Promise<void> {
+  const filePath = missionFilePath(mission.projectPath, mission);
+  const payload = `${JSON.stringify(mission, null, 2)}\n`;
+  await writeFileAtomic(filePath, payload);
+}
+
+export async function createMission(options: CreateMissionOptions): Promise<Mission> {
+  const name = options.name.trim();
+  if (name.length === 0) {
+    throw new Error('Mission name is required');
+  }
+
+  const resolvedProjectPath = path.resolve(options.projectPath ?? process.cwd());
+  const mission = buildMissionFromOptions({ ...options, name }, resolvedProjectPath);
+
+  const missionPath = missionFilePath(resolvedProjectPath, mission);
+  const hasExistingMission = await fileExists(missionPath);
+
+  if (hasExistingMission) {
+    const existingRaw = await fs.readFile(missionPath, 'utf8');
+    const existingMission = normalizeMission(JSON.parse(existingRaw), resolvedProjectPath);
+    const active = existingMission.status === 'active' || existingMission.status === 'paused';
+    if (active && options.force !== true) {
+      throw new Error(
+        `Active mission exists: ${existingMission.name} (${existingMission.status}). Use force to overwrite.`,
+      );
+    }
+  }
+
+  await saveMission(mission);
+
+  const manifestPath = toAbsolutePath(resolvedProjectPath, mission.manifestFile);
+  const scratchpadPath = toAbsolutePath(resolvedProjectPath, mission.scratchpadFile);
+  const tasksPath = toAbsolutePath(resolvedProjectPath, mission.tasksFile);
+
+  if (options.force === true || !(await fileExists(manifestPath))) {
+    await writeFileAtomic(manifestPath, renderManifest(mission));
+  }
+
+  if (!(await fileExists(scratchpadPath))) {
+    await writeFileAtomic(scratchpadPath, renderScratchpad(mission));
+  }
+
+  if (!(await fileExists(tasksPath))) {
+    await writeFileAtomic(tasksPath, writeTasksFile([]));
+  }
+
+  return mission;
+}
+
+export async function loadMission(projectPath: string): Promise<Mission> {
+  const resolvedProjectPath = path.resolve(projectPath);
+  const filePath = missionFilePath(resolvedProjectPath);
+
+  let raw: string;
+  try {
+    raw = await fs.readFile(filePath, 'utf8');
+  } catch (error) {
+    if (isNodeErrorWithCode(error, 'ENOENT')) {
+      throw new Error(`No mission found at ${filePath}`);
+    }
+    throw error;
+  }
+
+  const mission = normalizeMission(JSON.parse(raw), resolvedProjectPath);
+  if (mission.status === 'inactive') {
+    throw new Error('Mission exists but is inactive. Re-initialize with mosaic coord init.');
+  }
+
+  return mission;
+}

packages/coord/src/runner.ts

@@ -0,0 +1,488 @@
+import { spawn, spawnSync } from 'node:child_process';
+import { promises as fs } from 'node:fs';
+import path from 'node:path';
+
+import { loadMission, saveMission } from './mission.js';
+import { parseTasksFile, updateTaskStatus } from './tasks-file.js';
+import type {
+  Mission,
+  MissionMilestone,
+  MissionSession,
+  RunTaskOptions,
+  TaskRun,
+} from './types.js';
+
+const SESSION_LOCK_FILE = 'session.lock';
+const NEXT_TASK_FILE = 'next-task.json';
+
+interface SessionLockState {
+  session_id: string;
+  runtime: 'claude' | 'codex';
+  pid: number;
+  started_at: string;
+  project_path: string;
+  milestone_id?: string;
+}
+
+function orchestratorDirPath(mission: Mission): string {
+  if (path.isAbsolute(mission.orchestratorDir)) {
+    return mission.orchestratorDir;
+  }
+
+  return path.join(mission.projectPath, mission.orchestratorDir);
+}
+
+function sessionLockPath(mission: Mission): string {
+  return path.join(orchestratorDirPath(mission), SESSION_LOCK_FILE);
+}
+
+function nextTaskCapsulePath(mission: Mission): string {
+  return path.join(orchestratorDirPath(mission), NEXT_TASK_FILE);
+}
+
+function tasksFilePath(mission: Mission): string {
+  if (path.isAbsolute(mission.tasksFile)) {
+    return mission.tasksFile;
+  }
+
+  return path.join(mission.projectPath, mission.tasksFile);
+}
+
+function buildSessionId(mission: Mission): string {
+  return `sess-${String(mission.sessions.length + 1).padStart(3, '0')}`;
+}
+
+function isPidAlive(pid: number): boolean {
+  try {
+    process.kill(pid, 0);
+    return true;
+  } catch {
+    return false;
+  }
+}
+
+function currentMilestone(mission: Mission): MissionMilestone | undefined {
+  return mission.milestones.find((milestone) => milestone.status === 'in-progress')
+    ?? mission.milestones.find((milestone) => milestone.status === 'pending');
+}
+
+async function readTasks(mission: Mission) {
+  const filePath = tasksFilePath(mission);
+
+  try {
+    const content = await fs.readFile(filePath, 'utf8');
+    return parseTasksFile(content);
+  } catch (error) {
+    if (
+      typeof error === 'object' &&
+      error !== null &&
+      'code' in error &&
+      (error as { code?: string }).code === 'ENOENT'
+    ) {
+      return [];
+    }
+
+    throw error;
+  }
+}
+
+function currentBranch(projectPath: string): string | undefined {
+  const result = spawnSync('git', ['-C', projectPath, 'branch', '--show-current'], {
+    encoding: 'utf8',
+  });
+
+  if (result.status !== 0) {
+    return undefined;
+  }
+
+  const branch = result.stdout.trim();
+  return branch.length > 0 ? branch : undefined;
+}
+
+function percentage(done: number, total: number): number {
+  if (total === 0) {
+    return 0;
+  }
+
+  return Math.floor((done / total) * 100);
+}
+
+function formatDurationSeconds(totalSeconds: number): string {
+  if (totalSeconds < 60) {
+    return `${totalSeconds}s`;
+  }
+
+  if (totalSeconds < 3600) {
+    const minutes = Math.floor(totalSeconds / 60);
+    const seconds = totalSeconds % 60;
+    return `${minutes}m ${seconds}s`;
+  }
+
+  const hours = Math.floor(totalSeconds / 3600);
+  const minutes = Math.floor((totalSeconds % 3600) / 60);
+  return `${hours}h ${minutes}m`;
+}
+
+function buildContinuationPrompt(params: {
+  mission: Mission;
+  taskId: string;
+  runtime: 'claude' | 'codex';
+  tasksDone: number;
+  tasksTotal: number;
+  currentMilestone?: MissionMilestone;
+  previousSession?: MissionSession;
+  branch?: string;
+}): string {
+  const {
+    mission,
+    taskId,
+    runtime,
+    tasksDone,
+    tasksTotal,
+    currentMilestone,
+    previousSession,
+    branch,
+  } = params;
+
+  const pct = percentage(tasksDone, tasksTotal);
+  const previousDuration =
+    previousSession?.durationSeconds !== undefined
+      ? formatDurationSeconds(previousSession.durationSeconds)
+      : '—';
+
+  return [
+    '## Continuation Mission',
+    '',
+    `Continue **${mission.name}** from existing state.`,
+    '',
+    '## Setup',
+    '',
+    `- **Project:** ${mission.projectPath}`,
+    `- **State:** ${mission.tasksFile} (${tasksDone}/${tasksTotal} tasks complete)`,
+    `- **Manifest:** ${mission.manifestFile}`,
+    `- **Scratchpad:** ${mission.scratchpadFile}`,
+    '- **Protocol:** ~/.config/mosaic/guides/ORCHESTRATOR.md',
+    `- **Quality gates:** ${mission.qualityGates ?? '—'}`,
+    `- **Target runtime:** ${runtime}`,
+    '',
+    '## Resume Point',
+    '',
+    `- **Current milestone:** ${currentMilestone?.name ?? '—'} (${currentMilestone?.id ?? '—'})`,
+    `- **Next task:** ${taskId}`,
+    `- **Progress:** ${tasksDone}/${tasksTotal} (${pct}%)`,
+    `- **Branch:** ${branch ?? '—'}`,
+    '',
+    '## Previous Session Context',
+    '',
+    `- **Session:** ${previousSession?.sessionId ?? '—'} (${previousSession?.runtime ?? '—'}, ${previousDuration})`,
+    `- **Ended:** ${previousSession?.endedReason ?? '—'}`,
+    `- **Last completed task:** ${previousSession?.lastTaskId ?? '—'}`,
+    '',
+    '## Instructions',
+    '',
+    '1. Read `~/.config/mosaic/guides/ORCHESTRATOR.md` for full protocol',
+    `2. Read \`${mission.manifestFile}\` for mission scope and status`,
+    `3. Read \`${mission.scratchpadFile}\` for session history and decisions`,
+    `4. Read \`${mission.tasksFile}\` for current task state`,
+    '5. `git pull --rebase` to sync latest changes',
+    `6. Launch runtime with \`${runtime} -p\``,
+    `7. Continue execution from task **${taskId}**`,
+    '8. Follow Two-Phase Completion Protocol',
+    `9. You are the SOLE writer of \`${mission.tasksFile}\``,
+  ].join('\n');
+}
+
+function resolveLaunchCommand(
+  runtime: 'claude' | 'codex',
+  prompt: string,
+  configuredCommand: string[] | undefined,
+): string[] {
+  if (configuredCommand === undefined || configuredCommand.length === 0) {
+    return [runtime, '-p', prompt];
+  }
+
+  const withInterpolation = configuredCommand.map((value) =>
+    value === '{prompt}' ? prompt : value,
+  );
+
+  if (withInterpolation.includes(prompt)) {
+    return withInterpolation;
+  }
+
+  return [...withInterpolation, prompt];
+}
+
+async function writeAtomicJson(filePath: string, payload: unknown): Promise<void> {
+  const directory = path.dirname(filePath);
+  await fs.mkdir(directory, { recursive: true });
+
+  const tempPath = path.join(
+    directory,
+    `.${path.basename(filePath)}.tmp-${process.pid}-${Date.now()}-${Math.random()
+      .toString(16)
+      .slice(2)}`,
+  );
+
+  await fs.writeFile(tempPath, `${JSON.stringify(payload, null, 2)}\n`, 'utf8');
+  await fs.rename(tempPath, filePath);
+}
+
+async function readSessionLock(mission: Mission): Promise<SessionLockState | undefined> {
+  const filePath = sessionLockPath(mission);
+
+  try {
+    const raw = await fs.readFile(filePath, 'utf8');
+    const data = JSON.parse(raw) as Partial<SessionLockState>;
+
+    if (
+      typeof data.session_id !== 'string' ||
+      (data.runtime !== 'claude' && data.runtime !== 'codex') ||
+      typeof data.pid !== 'number' ||
+      typeof data.started_at !== 'string' ||
+      typeof data.project_path !== 'string'
+    ) {
+      return undefined;
+    }
+
+    return {
+      session_id: data.session_id,
+      runtime: data.runtime,
+      pid: data.pid,
+      started_at: data.started_at,
+      project_path: data.project_path,
+      milestone_id: data.milestone_id,
+    };
+  } catch (error) {
+    if (
+      typeof error === 'object' &&
+      error !== null &&
+      'code' in error &&
+      (error as { code?: string }).code === 'ENOENT'
+    ) {
+      return undefined;
+    }
+
+    throw error;
+  }
+}
+
+async function writeSessionLock(
+  mission: Mission,
+  lock: SessionLockState,
+): Promise<void> {
+  await writeAtomicJson(sessionLockPath(mission), lock);
+}
+
+function markSessionCrashed(
+  mission: Mission,
+  sessionId: string,
+  endedAt: string,
+): Mission {
+  const sessions = mission.sessions.map((session) => {
+    if (session.sessionId !== sessionId) {
+      return session;
+    }
+
+    if (session.endedAt !== undefined) {
+      return session;
+    }
+
+    const startedEpoch = Date.parse(session.startedAt);
+    const endedEpoch = Date.parse(endedAt);
+    const durationSeconds =
+      Number.isFinite(startedEpoch) && Number.isFinite(endedEpoch)
+        ? Math.max(0, Math.floor((endedEpoch - startedEpoch) / 1000))
+        : undefined;
+
+    return {
+      ...session,
+      endedAt,
+      endedReason: 'crashed' as const,
+      durationSeconds,
+    };
+  });
+
+  return {
+    ...mission,
+    sessions,
+  };
+}
+
+export async function runTask(
+  mission: Mission,
+  taskId: string,
+  options: RunTaskOptions = {},
+): Promise<TaskRun> {
+  const runtime = options.runtime ?? 'claude';
+  const mode = options.mode ?? 'interactive';
+
+  const freshMission = await loadMission(mission.projectPath);
+  const tasks = await readTasks(freshMission);
+  const matches = tasks.filter((task) => task.id === taskId);
+
+  if (matches.length === 0) {
+    throw new Error(`Task not found: ${taskId}`);
+  }
+
+  if (matches.length > 1) {
+    throw new Error(`Duplicate task IDs found: ${taskId}`);
+  }
+
+  const task = matches[0];
+  if (task.status === 'done' || task.status === 'cancelled') {
+    throw new Error(`Task ${taskId} cannot be run from status ${task.status}`);
+  }
+
+  const tasksTotal = tasks.length;
+  const tasksDone = tasks.filter((candidate) => candidate.status === 'done').length;
+  const selectedMilestone =
+    freshMission.milestones.find((milestone) => milestone.id === options.milestoneId)
+    ?? freshMission.milestones.find((milestone) => milestone.id === task.milestone)
+    ?? currentMilestone(freshMission);
+
+  const continuationPrompt = buildContinuationPrompt({
+    mission: freshMission,
+    taskId,
+    runtime,
+    tasksDone,
+    tasksTotal,
+    currentMilestone: selectedMilestone,
+    previousSession: freshMission.sessions.at(-1),
+    branch: currentBranch(freshMission.projectPath),
+  });
+
+  const launchCommand = resolveLaunchCommand(runtime, continuationPrompt, options.command);
+  const startedAt = new Date().toISOString();
+  const sessionId = buildSessionId(freshMission);
+  const lockFile = sessionLockPath(freshMission);
+
+  await writeAtomicJson(nextTaskCapsulePath(freshMission), {
+    generated_at: startedAt,
+    runtime,
+    mission_id: freshMission.id,
+    mission_name: freshMission.name,
+    project_path: freshMission.projectPath,
+    quality_gates: freshMission.qualityGates ?? '',
+    current_milestone: {
+      id: selectedMilestone?.id ?? '',
+      name: selectedMilestone?.name ?? '',
+    },
+    next_task: taskId,
+    progress: {
+      tasks_done: tasksDone,
+      tasks_total: tasksTotal,
+      pct: percentage(tasksDone, tasksTotal),
+    },
+    current_branch: currentBranch(freshMission.projectPath) ?? '',
+  });
+
+  if (mode === 'print-only') {
+    return {
+      missionId: freshMission.id,
+      taskId,
+      sessionId,
+      runtime,
+      launchCommand,
+      startedAt,
+      lockFile,
+    };
+  }
+
+  await updateTaskStatus(freshMission, taskId, 'in-progress');
+
+  await writeSessionLock(freshMission, {
+    session_id: sessionId,
+    runtime,
+    pid: 0,
+    started_at: startedAt,
+    project_path: freshMission.projectPath,
+    milestone_id: selectedMilestone?.id,
+  });
+
+  const child = spawn(launchCommand[0], launchCommand.slice(1), {
+    cwd: freshMission.projectPath,
+    env: {
+      ...process.env,
+      ...(options.env ?? {}),
+    },
+    stdio: 'inherit',
+  });
+
+  await new Promise<void>((resolve, reject) => {
+    child.once('spawn', () => {
+      resolve();
+    });
+    child.once('error', (error) => {
+      reject(error);
+    });
+  });
+
+  const pid = child.pid;
+  if (pid === undefined) {
+    throw new Error('Failed to start task runtime process (pid missing)');
+  }
+
+  await writeSessionLock(freshMission, {
+    session_id: sessionId,
+    runtime,
+    pid,
+    started_at: startedAt,
+    project_path: freshMission.projectPath,
+    milestone_id: selectedMilestone?.id,
+  });
+
+  const updatedMission: Mission = {
+    ...freshMission,
+    status: 'active',
+    sessions: [
+      ...freshMission.sessions,
+      {
+        sessionId,
+        runtime,
+        pid,
+        startedAt,
+        milestoneId: selectedMilestone?.id,
+        lastTaskId: taskId,
+      },
+    ],
+  };
+
+  await saveMission(updatedMission);
+
+  return {
+    missionId: updatedMission.id,
+    taskId,
+    sessionId,
+    runtime,
+    launchCommand,
+    startedAt,
+    pid,
+    lockFile,
+  };
+}
+
+export async function resumeTask(
+  mission: Mission,
+  taskId: string,
+  options: Omit<RunTaskOptions, 'milestoneId'> = {},
+): Promise<TaskRun> {
+  const freshMission = await loadMission(mission.projectPath);
+  const lock = await readSessionLock(freshMission);
+
+  if (lock !== undefined && lock.pid > 0 && isPidAlive(lock.pid)) {
+    throw new Error(
+      `Session ${lock.session_id} is still running (PID ${lock.pid}).`,
+    );
+  }
+
+  let nextMissionState = freshMission;
+
+  if (lock !== undefined) {
+    const endedAt = new Date().toISOString();
+    nextMissionState = markSessionCrashed(freshMission, lock.session_id, endedAt);
+    await saveMission(nextMissionState);
+    await fs.rm(sessionLockPath(nextMissionState), { force: true });
+  }
+
+  return runTask(nextMissionState, taskId, options);
+}

packages/coord/src/status.ts

@@ -0,0 +1,183 @@
+import { promises as fs } from 'node:fs';
+import path from 'node:path';
+
+import { loadMission } from './mission.js';
+import { parseTasksFile } from './tasks-file.js';
+import type {
+  Mission,
+  MissionSession,
+  MissionStatusSummary,
+  MissionTask,
+  TaskDetail,
+} from './types.js';
+
+const SESSION_LOCK_FILE = 'session.lock';
+
+interface SessionLockState {
+  session_id?: string;
+  runtime?: string;
+  pid?: number;
+  started_at?: string;
+  milestone_id?: string;
+}
+
+function tasksFilePath(mission: Mission): string {
+  if (path.isAbsolute(mission.tasksFile)) {
+    return mission.tasksFile;
+  }
+
+  return path.join(mission.projectPath, mission.tasksFile);
+}
+
+function sessionLockPath(mission: Mission): string {
+  const orchestratorDir = path.isAbsolute(mission.orchestratorDir)
+    ? mission.orchestratorDir
+    : path.join(mission.projectPath, mission.orchestratorDir);
+
+  return path.join(orchestratorDir, SESSION_LOCK_FILE);
+}
+
+function isPidAlive(pid: number): boolean {
+  try {
+    process.kill(pid, 0);
+    return true;
+  } catch {
+    return false;
+  }
+}
+
+async function readTasks(mission: Mission): Promise<MissionTask[]> {
+  try {
+    const content = await fs.readFile(tasksFilePath(mission), 'utf8');
+    return parseTasksFile(content);
+  } catch (error) {
+    if (
+      typeof error === 'object' &&
+      error !== null &&
+      'code' in error &&
+      (error as { code?: string }).code === 'ENOENT'
+    ) {
+      return [];
+    }
+
+    throw error;
+  }
+}
+
+async function readActiveSession(mission: Mission): Promise<MissionSession | undefined> {
+  let lockRaw: string;
+  try {
+    lockRaw = await fs.readFile(sessionLockPath(mission), 'utf8');
+  } catch (error) {
+    if (
+      typeof error === 'object' &&
+      error !== null &&
+      'code' in error &&
+      (error as { code?: string }).code === 'ENOENT'
+    ) {
+      return undefined;
+    }
+
+    throw error;
+  }
+
+  const lock = JSON.parse(lockRaw) as SessionLockState;
+  if (
+    typeof lock.session_id !== 'string' ||
+    (lock.runtime !== 'claude' && lock.runtime !== 'codex') ||
+    typeof lock.started_at !== 'string'
+  ) {
+    return undefined;
+  }
+
+  const pid = typeof lock.pid === 'number' ? lock.pid : undefined;
+  if (pid !== undefined && pid > 0 && !isPidAlive(pid)) {
+    return undefined;
+  }
+
+  const existingSession = mission.sessions.find(
+    (session) => session.sessionId === lock.session_id,
+  );
+  if (existingSession !== undefined) {
+    return existingSession;
+  }
+
+  return {
+    sessionId: lock.session_id,
+    runtime: lock.runtime,
+    pid,
+    startedAt: lock.started_at,
+    milestoneId: lock.milestone_id,
+  };
+}
+
+export async function getMissionStatus(mission: Mission): Promise<MissionStatusSummary> {
+  const freshMission = await loadMission(mission.projectPath);
+  const tasks = await readTasks(freshMission);
+
+  const done = tasks.filter((task) => task.status === 'done').length;
+  const inProgress = tasks.filter((task) => task.status === 'in-progress').length;
+  const pending = tasks.filter((task) => task.status === 'not-started').length;
+  const blocked = tasks.filter((task) => task.status === 'blocked').length;
+  const cancelled = tasks.filter((task) => task.status === 'cancelled').length;
+  const nextTask = tasks.find((task) => task.status === 'not-started');
+
+  const completedMilestones = freshMission.milestones.filter(
+    (milestone) => milestone.status === 'completed',
+  ).length;
+  const currentMilestone =
+    freshMission.milestones.find((milestone) => milestone.status === 'in-progress')
+    ?? freshMission.milestones.find((milestone) => milestone.status === 'pending');
+
+  const activeSession = await readActiveSession(freshMission);
+
+  return {
+    mission: {
+      id: freshMission.id,
+      name: freshMission.name,
+      status: freshMission.status,
+      projectPath: freshMission.projectPath,
+    },
+    milestones: {
+      total: freshMission.milestones.length,
+      completed: completedMilestones,
+      current: currentMilestone,
+    },
+    tasks: {
+      total: tasks.length,
+      done,
+      inProgress,
+      pending,
+      blocked,
+      cancelled,
+    },
+    nextTaskId: nextTask?.id,
+    activeSession,
+  };
+}
+
+export async function getTaskStatus(
+  mission: Mission,
+  taskId: string,
+): Promise<TaskDetail> {
+  const freshMission = await loadMission(mission.projectPath);
+  const tasks = await readTasks(freshMission);
+
+  const matches = tasks.filter((task) => task.id === taskId);
+  if (matches.length === 0) {
+    throw new Error(`Task not found: ${taskId}`);
+  }
+
+  if (matches.length > 1) {
+    throw new Error(`Duplicate task IDs found: ${taskId}`);
+  }
+
+  const summary = await getMissionStatus(freshMission);
+
+  return {
+    missionId: freshMission.id,
+    task: matches[0],
+    isNextTask: summary.nextTaskId === taskId,
+    activeSession: summary.activeSession,
+  };
+}

packages/coord/src/tasks-file.ts

@@ -0,0 +1,378 @@
+import { promises as fs } from 'node:fs';
+import path from 'node:path';
+
+import type { Mission, MissionTask, TaskStatus } from './types.js';
+import { normalizeTaskStatus } from './types.js';
+
+const TASKS_LOCK_FILE = '.TASKS.md.lock';
+const TASKS_LOCK_STALE_MS = 5 * 60 * 1000;
+const TASKS_LOCK_WAIT_MS = 5 * 1000;
+const TASKS_LOCK_RETRY_MS = 100;
+
+const DEFAULT_TABLE_HEADER = [
+  '| id | status | milestone | description | pr | notes |',
+  '|----|--------|-----------|-------------|----|-------|',
+] as const;
+
+const DEFAULT_TASKS_PREAMBLE = [
+  '# Tasks',
+  '',
+  '> Single-writer: orchestrator only. Workers read but never modify.',
+  '',
+  ...DEFAULT_TABLE_HEADER,
+] as const;
+
+interface ParsedTableRow {
+  readonly lineIndex: number;
+  readonly cells: string[];
+}
+
+interface ParsedTable {
+  readonly headerLineIndex: number;
+  readonly separatorLineIndex: number;
+  readonly headers: string[];
+  readonly rows: ParsedTableRow[];
+  readonly idColumn: number;
+  readonly statusColumn: number;
+}
+
+function normalizeHeaderName(input: string): string {
+  return input.trim().toLowerCase();
+}
+
+function splitMarkdownRow(line: string): string[] {
+  const trimmed = line.trim();
+  if (!trimmed.startsWith('|')) {
+    return [];
+  }
+
+  const parts = trimmed.split(/(?<!\\)\|/);
+  if (parts.length < 3) {
+    return [];
+  }
+
+  return parts.slice(1, -1).map((part) => part.trim().replace(/\\\|/g, '|'));
+}
+
+function isSeparatorRow(cells: readonly string[]): boolean {
+  return (
+    cells.length > 0 &&
+    cells.every((cell) => {
+      const value = cell.trim();
+      return /^:?-{3,}:?$/.test(value);
+    })
+  );
+}
+
+function parseTable(content: string): ParsedTable | undefined {
+  const lines = content.split(/\r?\n/);
+
+  let headerLineIndex = -1;
+  let separatorLineIndex = -1;
+  let headers: string[] = [];
+
+  for (let index = 0; index < lines.length; index += 1) {
+    const cells = splitMarkdownRow(lines[index]);
+    if (cells.length === 0) {
+      continue;
+    }
+
+    const normalized = cells.map(normalizeHeaderName);
+    if (!normalized.includes('id') || !normalized.includes('status')) {
+      continue;
+    }
+
+    if (index + 1 >= lines.length) {
+      continue;
+    }
+
+    const separatorCells = splitMarkdownRow(lines[index + 1]);
+    if (!isSeparatorRow(separatorCells)) {
+      continue;
+    }
+
+    headerLineIndex = index;
+    separatorLineIndex = index + 1;
+    headers = normalized;
+    break;
+  }
+
+  if (headerLineIndex < 0 || separatorLineIndex < 0) {
+    return undefined;
+  }
+
+  const idColumn = headers.indexOf('id');
+  const statusColumn = headers.indexOf('status');
+  if (idColumn < 0 || statusColumn < 0) {
+    return undefined;
+  }
+
+  const rows: ParsedTableRow[] = [];
+  let sawData = false;
+
+  for (let index = separatorLineIndex + 1; index < lines.length; index += 1) {
+    const rawLine = lines[index];
+    const trimmed = rawLine.trim();
+
+    if (!trimmed.startsWith('|')) {
+      if (sawData) {
+        break;
+      }
+      continue;
+    }
+
+    const cells = splitMarkdownRow(rawLine);
+    if (cells.length === 0) {
+      if (sawData) {
+        break;
+      }
+      continue;
+    }
+
+    sawData = true;
+
+    const normalizedRow = [...cells];
+    while (normalizedRow.length < headers.length) {
+      normalizedRow.push('');
+    }
+
+    rows.push({ lineIndex: index, cells: normalizedRow });
+  }
+
+  return {
+    headerLineIndex,
+    separatorLineIndex,
+    headers,
+    rows,
+    idColumn,
+    statusColumn,
+  };
+}
+
+function escapeTableCell(value: string): string {
+  return value.replace(/\|/g, '\\|').replace(/\r?\n/g, ' ').trim();
+}
+
+function formatTableRow(cells: readonly string[]): string {
+  const escaped = cells.map((cell) => escapeTableCell(cell));
+  return `| ${escaped.join(' | ')} |`;
+}
+
+function parseDependencies(raw: string | undefined): string[] {
+  if (raw === undefined || raw.trim().length === 0) {
+    return [];
+  }
+
+  return raw
+    .split(',')
+    .map((value) => value.trim())
+    .filter((value) => value.length > 0);
+}
+
+function resolveTasksFilePath(mission: Mission): string {
+  if (path.isAbsolute(mission.tasksFile)) {
+    return mission.tasksFile;
+  }
+
+  return path.join(mission.projectPath, mission.tasksFile);
+}
+
+function isNodeErrorWithCode(error: unknown, code: string): boolean {
+  return (
+    typeof error === 'object' &&
+    error !== null &&
+    'code' in error &&
+    (error as { code?: string }).code === code
+  );
+}
+
+async function delay(ms: number): Promise<void> {
+  await new Promise((resolve) => {
+    setTimeout(resolve, ms);
+  });
+}
+
+async function acquireLock(lockPath: string): Promise<void> {
+  const startedAt = Date.now();
+
+  while (Date.now() - startedAt < TASKS_LOCK_WAIT_MS) {
+    try {
+      const handle = await fs.open(lockPath, 'wx');
+      await handle.writeFile(
+        JSON.stringify(
+          {
+            pid: process.pid,
+            acquiredAt: new Date().toISOString(),
+          },
+          null,
+          2,
+        ),
+      );
+      await handle.close();
+      return;
+    } catch (error) {
+      if (!isNodeErrorWithCode(error, 'EEXIST')) {
+        throw error;
+      }
+
+      try {
+        const stats = await fs.stat(lockPath);
+        if (Date.now() - stats.mtimeMs > TASKS_LOCK_STALE_MS) {
+          await fs.rm(lockPath, { force: true });
+          continue;
+        }
+      } catch (statError) {
+        if (!isNodeErrorWithCode(statError, 'ENOENT')) {
+          throw statError;
+        }
+      }
+
+      await delay(TASKS_LOCK_RETRY_MS);
+    }
+  }
+
+  throw new Error(`Timed out acquiring TASKS lock: ${lockPath}`);
+}
+
+async function releaseLock(lockPath: string): Promise<void> {
+  await fs.rm(lockPath, { force: true });
+}
+
+async function writeAtomic(filePath: string, content: string): Promise<void> {
+  const directory = path.dirname(filePath);
+  const tempPath = path.join(
+    directory,
+    `.TASKS.md.tmp-${process.pid}-${Date.now()}-${Math.random().toString(16).slice(2)}`,
+  );
+
+  await fs.writeFile(tempPath, content, 'utf8');
+  await fs.rename(tempPath, filePath);
+}
+
+export function parseTasksFile(content: string): MissionTask[] {
+  const parsedTable = parseTable(content);
+  if (parsedTable === undefined) {
+    return [];
+  }
+
+  const headerToColumn = new Map<string, number>();
+  parsedTable.headers.forEach((header, index) => {
+    headerToColumn.set(header, index);
+  });
+
+  const descriptionColumn =
+    headerToColumn.get('description') ?? headerToColumn.get('title') ?? -1;
+  const milestoneColumn = headerToColumn.get('milestone') ?? -1;
+  const prColumn = headerToColumn.get('pr') ?? -1;
+  const notesColumn = headerToColumn.get('notes') ?? -1;
+  const assigneeColumn = headerToColumn.get('assignee') ?? -1;
+  const dependenciesColumn = headerToColumn.get('dependencies') ?? -1;
+
+  const tasks: MissionTask[] = [];
+
+  for (const row of parsedTable.rows) {
+    const id = row.cells[parsedTable.idColumn]?.trim();
+    if (id === undefined || id.length === 0) {
+      continue;
+    }
+
+    const rawStatusValue = row.cells[parsedTable.statusColumn] ?? '';
+    const normalized = normalizeTaskStatus(rawStatusValue);
+
+    const title = descriptionColumn >= 0 ? row.cells[descriptionColumn] ?? '' : '';
+    const milestone = milestoneColumn >= 0 ? row.cells[milestoneColumn] ?? '' : '';
+    const pr = prColumn >= 0 ? row.cells[prColumn] ?? '' : '';
+    const notes = notesColumn >= 0 ? row.cells[notesColumn] ?? '' : '';
+    const assignee = assigneeColumn >= 0 ? row.cells[assigneeColumn] ?? '' : '';
+    const dependenciesRaw =
+      dependenciesColumn >= 0 ? row.cells[dependenciesColumn] ?? '' : '';
+
+    tasks.push({
+      id,
+      title,
+      status: normalized.status,
+      dependencies: parseDependencies(dependenciesRaw),
+      milestone: milestone.length > 0 ? milestone : undefined,
+      pr: pr.length > 0 ? pr : undefined,
+      notes: notes.length > 0 ? notes : undefined,
+      assignee: assignee.length > 0 ? assignee : undefined,
+      rawStatus: normalized.rawStatus,
+      line: row.lineIndex + 1,
+    });
+  }
+
+  return tasks;
+}
+
+export function writeTasksFile(tasks: MissionTask[]): string {
+  const lines: string[] = [...DEFAULT_TASKS_PREAMBLE];
+
+  for (const task of tasks) {
+    lines.push(
+      formatTableRow([
+        task.id,
+        task.status,
+        task.milestone ?? '',
+        task.title,
+        task.pr ?? '',
+        task.notes ?? '',
+      ]),
+    );
+  }
+
+  return `${lines.join('\n')}\n`;
+}
+
+export async function updateTaskStatus(
+  mission: Mission,
+  taskId: string,
+  status: TaskStatus,
+): Promise<void> {
+  const tasksFilePath = resolveTasksFilePath(mission);
+  const lockPath = path.join(path.dirname(tasksFilePath), TASKS_LOCK_FILE);
+
+  await fs.mkdir(path.dirname(tasksFilePath), { recursive: true });
+  await acquireLock(lockPath);
+
+  try {
+    let content: string;
+    try {
+      content = await fs.readFile(tasksFilePath, 'utf8');
+    } catch (error) {
+      if (isNodeErrorWithCode(error, 'ENOENT')) {
+        throw new Error(`TASKS file not found: ${tasksFilePath}`);
+      }
+      throw error;
+    }
+
+    const table = parseTable(content);
+    if (table === undefined) {
+      throw new Error(`Could not parse TASKS table in ${tasksFilePath}`);
+    }
+
+    const matchingRows = table.rows.filter((row) => {
+      const rowTaskId = row.cells[table.idColumn]?.trim();
+      return rowTaskId === taskId;
+    });
+
+    if (matchingRows.length === 0) {
+      throw new Error(`Task not found in TASKS.md: ${taskId}`);
+    }
+
+    if (matchingRows.length > 1) {
+      throw new Error(`Duplicate task IDs found in TASKS.md: ${taskId}`);
+    }
+
+    const targetRow = matchingRows[0];
+    const updatedCells = [...targetRow.cells];
+    updatedCells[table.statusColumn] = status;
+
+    const lines = content.split(/\r?\n/);
+    lines[targetRow.lineIndex] = formatTableRow(updatedCells);
+
+    const updatedContent = `${lines.join('\n').replace(/\n+$/, '')}\n`;
+    await writeAtomic(tasksFilePath, updatedContent);
+  } finally {
+    await releaseLock(lockPath);
+  }
+}

packages/coord/src/types.ts

@@ -0,0 +1,194 @@
+export type TaskStatus =
+  | 'not-started'
+  | 'in-progress'
+  | 'done'
+  | 'blocked'
+  | 'cancelled';
+
+export type MissionStatus = 'active' | 'paused' | 'completed' | 'inactive';
+
+export type MissionRuntime = 'claude' | 'codex' | 'unknown';
+
+export interface MissionMilestone {
+  id: string;
+  name: string;
+  status: 'pending' | 'in-progress' | 'completed' | 'blocked';
+  branch?: string;
+  issueRef?: string;
+  startedAt?: string;
+  completedAt?: string;
+}
+
+export interface MissionSession {
+  sessionId: string;
+  runtime: MissionRuntime;
+  pid?: number;
+  startedAt: string;
+  endedAt?: string;
+  endedReason?: 'completed' | 'paused' | 'crashed' | 'killed' | 'unknown';
+  milestoneId?: string;
+  lastTaskId?: string;
+  durationSeconds?: number;
+}
+
+export interface Mission {
+  schemaVersion: 1;
+  id: string;
+  name: string;
+  description?: string;
+  projectPath: string;
+  createdAt: string;
+  status: MissionStatus;
+  tasksFile: string;
+  manifestFile: string;
+  scratchpadFile: string;
+  orchestratorDir: string;
+  taskPrefix?: string;
+  qualityGates?: string;
+  milestoneVersion?: string;
+  milestones: MissionMilestone[];
+  sessions: MissionSession[];
+}
+
+export interface MissionTask {
+  id: string;
+  title: string;
+  status: TaskStatus;
+  assignee?: string;
+  dependencies: string[];
+  milestone?: string;
+  pr?: string;
+  notes?: string;
+  rawStatus?: string;
+  line?: number;
+}
+
+export interface TaskRun {
+  missionId: string;
+  taskId: string;
+  sessionId: string;
+  runtime: 'claude' | 'codex';
+  launchCommand: string[];
+  startedAt: string;
+  pid?: number;
+  lockFile: string;
+}
+
+export interface MissionStatusSummary {
+  mission: Pick<Mission, 'id' | 'name' | 'status' | 'projectPath'>;
+  milestones: {
+    total: number;
+    completed: number;
+    current?: MissionMilestone;
+  };
+  tasks: {
+    total: number;
+    done: number;
+    inProgress: number;
+    pending: number;
+    blocked: number;
+    cancelled: number;
+  };
+  nextTaskId?: string;
+  activeSession?: MissionSession;
+}
+
+export interface TaskDetail {
+  missionId: string;
+  task: MissionTask;
+  isNextTask: boolean;
+  activeSession?: MissionSession;
+}
+
+export interface CreateMissionOptions {
+  name: string;
+  projectPath?: string;
+  prefix?: string;
+  milestones?: string[];
+  qualityGates?: string;
+  version?: string;
+  description?: string;
+  force?: boolean;
+}
+
+export interface RunTaskOptions {
+  runtime?: 'claude' | 'codex';
+  mode?: 'interactive' | 'print-only';
+  milestoneId?: string;
+  launchStrategy?: 'subprocess' | 'spawn-adapter';
+  env?: Record<string, string>;
+  command?: string[];
+}
+
+export interface NextTaskCapsule {
+  generatedAt: string;
+  runtime: 'claude' | 'codex';
+  missionId: string;
+  missionName: string;
+  projectPath: string;
+  qualityGates?: string;
+  currentMilestone: {
+    id?: string;
+    name?: string;
+  };
+  nextTask: string;
+  progress: {
+    tasksDone: number;
+    tasksTotal: number;
+    pct: number;
+  };
+  currentBranch?: string;
+}
+
+const LEGACY_TASK_STATUS: Readonly<Record<string, TaskStatus>> = {
+  'not-started': 'not-started',
+  pending: 'not-started',
+  todo: 'not-started',
+  'in-progress': 'in-progress',
+  in_progress: 'in-progress',
+  done: 'done',
+  completed: 'done',
+  blocked: 'blocked',
+  failed: 'blocked',
+  cancelled: 'cancelled',
+};
+
+export function normalizeTaskStatus(input: string): {
+  status: TaskStatus;
+  rawStatus?: string;
+} {
+  const raw = input.trim().toLowerCase();
+  if (raw.length === 0) {
+    return { status: 'not-started' };
+  }
+
+  const normalized = LEGACY_TASK_STATUS[raw];
+  if (normalized === undefined) {
+    return { status: 'not-started', rawStatus: raw };
+  }
+
+  if (raw !== normalized) {
+    return { status: normalized, rawStatus: raw };
+  }
+
+  return { status: normalized };
+}
+
+export function isMissionStatus(value: string): value is MissionStatus {
+  return (
+    value === 'active' ||
+    value === 'paused' ||
+    value === 'completed' ||
+    value === 'inactive'
+  );
+}
+
+export function isTaskStatus(value: string): value is TaskStatus {
+  return (
+    value === 'not-started' ||
+    value === 'in-progress' ||
+    value === 'done' ||
+    value === 'blocked' ||
+    value === 'cancelled'
+  );
+}

packages/coord/tests/mission.test.ts

@@ -0,0 +1,64 @@
+import { promises as fs } from 'node:fs';
+import os from 'node:os';
+import path from 'node:path';
+
+import { describe, expect, it } from 'vitest';
+
+import { createMission, loadMission, missionFilePath } from '../src/mission.js';
+
+describe('mission lifecycle', () => {
+  it('creates and loads mission state files', async () => {
+    const projectDir = await fs.mkdtemp(path.join(os.tmpdir(), 'coord-mission-'));
+
+    try {
+      const mission = await createMission({
+        name: 'Wave 3 Mission',
+        projectPath: projectDir,
+        milestones: ['Phase One', 'Phase Two'],
+        qualityGates: 'pnpm lint && pnpm typecheck && pnpm test',
+        description: 'Wave 3 implementation',
+      });
+
+      expect(mission.id).toMatch(/^wave-3-mission-\d{8}$/);
+      expect(mission.status).toBe('active');
+      expect(mission.milestones).toHaveLength(2);
+
+      await expect(fs.stat(missionFilePath(projectDir, mission))).resolves.toBeDefined();
+      await expect(fs.stat(path.join(projectDir, 'docs/TASKS.md'))).resolves.toBeDefined();
+      await expect(
+        fs.stat(path.join(projectDir, '.mosaic/orchestrator/mission.json')),
+      ).resolves.toBeDefined();
+
+      const loaded = await loadMission(projectDir);
+      expect(loaded.id).toBe(mission.id);
+      expect(loaded.name).toBe('Wave 3 Mission');
+      expect(loaded.qualityGates).toBe('pnpm lint && pnpm typecheck && pnpm test');
+    } finally {
+      await fs.rm(projectDir, { recursive: true, force: true });
+    }
+  });
+
+  it('rejects inactive missions on load', async () => {
+    const projectDir = await fs.mkdtemp(path.join(os.tmpdir(), 'coord-mission-inactive-'));
+
+    try {
+      const mission = await createMission({
+        name: 'Inactive Mission',
+        projectPath: projectDir,
+      });
+
+      const missionPath = missionFilePath(projectDir, mission);
+      const payload = JSON.parse(await fs.readFile(missionPath, 'utf8')) as {
+        status: string;
+      };
+      payload.status = 'inactive';
+      await fs.writeFile(missionPath, `${JSON.stringify(payload, null, 2)}\n`, 'utf8');
+
+      await expect(loadMission(projectDir)).rejects.toThrow(
+        'Mission exists but is inactive',
+      );
+    } finally {
+      await fs.rm(projectDir, { recursive: true, force: true });
+    }
+  });
+});

packages/coord/tests/tasks-file.test.ts

@@ -0,0 +1,74 @@
+import { describe, expect, it } from 'vitest';
+
+import { parseTasksFile, writeTasksFile } from '../src/tasks-file.js';
+import type { MissionTask } from '../src/types.js';
+
+describe('parseTasksFile', () => {
+  it('normalizes legacy statuses from TASKS.md', () => {
+    const content = [
+      '# Tasks — Demo',
+      '',
+      '| id | status | milestone | description | pr | notes |',
+      '|----|--------|-----------|-------------|----|-------|',
+      '| T-1 | pending | phase-1 | First task | #10 | note a |',
+      '| T-2 | completed | phase-1 | Second task | #11 | note b |',
+      '| T-3 | in_progress | phase-2 | Third task |  |  |',
+      '| T-4 | failed | phase-2 | Fourth task |  |  |',
+      '',
+      'trailing text ignored',
+    ].join('\n');
+
+    const tasks = parseTasksFile(content);
+
+    expect(tasks).toHaveLength(4);
+    expect(tasks.map((task) => task.status)).toEqual([
+      'not-started',
+      'done',
+      'in-progress',
+      'blocked',
+    ]);
+    expect(tasks.map((task) => task.rawStatus)).toEqual([
+      'pending',
+      'completed',
+      'in_progress',
+      'failed',
+    ]);
+    expect(tasks[0]?.line).toBe(5);
+  });
+});
+
+describe('writeTasksFile', () => {
+  it('round-trips parse/write output', () => {
+    const tasks: MissionTask[] = [
+      {
+        id: 'W3-001',
+        title: 'Implement parser',
+        status: 'not-started',
+        milestone: 'phase-1',
+        pr: '#20',
+        notes: 'pending',
+        dependencies: [],
+      },
+      {
+        id: 'W3-002',
+        title: 'Implement runner',
+        status: 'in-progress',
+        milestone: 'phase-2',
+        notes: 'active',
+        dependencies: [],
+      },
+    ];
+
+    const content = writeTasksFile(tasks);
+    const reparsed = parseTasksFile(content);
+
+    expect(reparsed).toHaveLength(2);
+    expect(reparsed.map((task) => task.id)).toEqual(['W3-001', 'W3-002']);
+    expect(reparsed.map((task) => task.status)).toEqual([
+      'not-started',
+      'in-progress',
+    ]);
+    expect(reparsed[0]?.title).toBe('Implement parser');
+    expect(reparsed[1]?.milestone).toBe('phase-2');
+  });
+});

packages/coord/tsconfig.json

@@ -0,0 +1,5 @@
+{
+  "extends": "../../tsconfig.base.json",
+  "compilerOptions": { "outDir": "dist", "rootDir": "src" },
+  "include": ["src"]
+}

packages/prdy/package.json

@@ -0,0 +1,29 @@
+{
+  "name": "@mosaic/prdy",
+  "version": "0.1.0",
+  "type": "module",
+  "description": "Mosaic PRD wizard — TypeScript rewrite",
+  "scripts": {
+    "build": "tsc -p tsconfig.json",
+    "typecheck": "tsc --noEmit",
+    "lint": "eslint src/",
+    "test": "vitest run"
+  },
+  "dependencies": {
+    "@mosaic/types": "workspace:*",
+    "@clack/prompts": "^0.9",
+    "commander": "^13",
+    "js-yaml": "^4",
+    "zod": "^3.24"
+  },
+  "devDependencies": {
+    "@types/node": "^22",
+    "@types/js-yaml": "^4",
+    "typescript": "^5",
+    "vitest": "^2"
+  },
+  "publishConfig": {
+    "registry": "https://git.mosaicstack.dev/api/packages/mosaic/npm",
+    "access": "public"
+  }
+}

packages/prdy/src/cli.ts

@@ -0,0 +1,103 @@
+import { Command } from 'commander';
+
+import { createPrd, listPrds, loadPrd } from './prd.js';
+import { runPrdWizard } from './wizard.js';
+
+interface InitCommandOptions {
+  readonly name: string;
+  readonly project: string;
+  readonly template?: 'software' | 'feature' | 'spike';
+}
+
+interface ListCommandOptions {
+  readonly project: string;
+}
+
+interface ShowCommandOptions {
+  readonly project: string;
+  readonly id?: string;
+}
+
+export function buildPrdyCli(): Command {
+  const program = new Command();
+  program
+    .name('mosaic')
+    .description('Mosaic CLI')
+    .exitOverride();
+
+  const prdy = program.command('prdy').description('PRD wizard commands');
+
+  prdy
+    .command('init')
+    .description('Create a PRD document')
+    .requiredOption('--name <name>', 'PRD name')
+    .requiredOption('--project <path>', 'Project path')
+    .option('--template <template>', 'Template (software|feature|spike)')
+    .action(async (options: InitCommandOptions) => {
+      const doc = process.stdout.isTTY
+        ? await runPrdWizard({
+            name: options.name,
+            projectPath: options.project,
+            template: options.template,
+            interactive: true,
+          })
+        : await createPrd({
+            name: options.name,
+            projectPath: options.project,
+            template: options.template,
+            interactive: false,
+          });
+
+      console.log(
+        JSON.stringify(
+          {
+            ok: true,
+            id: doc.id,
+            title: doc.title,
+            status: doc.status,
+            projectPath: doc.projectPath,
+          },
+          null,
+          2,
+        ),
+      );
+    });
+
+  prdy
+    .command('list')
+    .description('List PRD documents for a project')
+    .requiredOption('--project <path>', 'Project path')
+    .action(async (options: ListCommandOptions) => {
+      const docs = await listPrds(options.project);
+      console.log(JSON.stringify(docs, null, 2));
+    });
+
+  prdy
+    .command('show')
+    .description('Show a PRD document')
+    .requiredOption('--project <path>', 'Project path')
+    .option('--id <id>', 'PRD document id')
+    .action(async (options: ShowCommandOptions) => {
+      if (options.id !== undefined) {
+        const docs = await listPrds(options.project);
+        const match = docs.find((doc) => doc.id === options.id);
+
+        if (match === undefined) {
+          throw new Error(`PRD id not found: ${options.id}`);
+        }
+
+        console.log(JSON.stringify(match, null, 2));
+        return;
+      }
+
+      const doc = await loadPrd(options.project);
+      console.log(JSON.stringify(doc, null, 2));
+    });
+
+  return program;
+}
+
+export async function runPrdyCli(argv: readonly string[] = process.argv): Promise<void> {
+  const program = buildPrdyCli();
+  await program.parseAsync(argv);
+}

packages/prdy/src/index.ts

@@ -0,0 +1,20 @@
+export {
+  createPrd,
+  loadPrd,
+  savePrd,
+  listPrds,
+} from './prd.js';
+export { runPrdWizard } from './wizard.js';
+export { buildPrdyCli, runPrdyCli } from './cli.js';
+export {
+  BUILTIN_PRD_TEMPLATES,
+  resolveTemplate,
+} from './templates.js';
+export type {
+  PrdStatus,
+  PrdTemplate,
+  PrdTemplateSection,
+  PrdSection,
+  PrdDocument,
+  CreatePrdOptions,
+} from './types.js';

packages/prdy/src/prd.ts

@@ -0,0 +1,199 @@
+import { promises as fs } from 'node:fs';
+import os from 'node:os';
+import path from 'node:path';
+
+import yaml from 'js-yaml';
+import { z } from 'zod';
+
+import { resolveTemplate } from './templates.js';
+import type { CreatePrdOptions, PrdDocument } from './types.js';
+
+const PRD_DIRECTORY = path.join('docs', 'prdy');
+const PRD_FILE_EXTENSIONS = new Set(['.yaml', '.yml']);
+
+const prdSectionSchema = z.object({
+  id: z.string().min(1),
+  title: z.string().min(1),
+  fields: z.record(z.string(), z.string()),
+});
+
+const prdDocumentSchema = z.object({
+  id: z.string().min(1),
+  title: z.string().min(1),
+  status: z.enum(['draft', 'review', 'approved', 'archived']),
+  projectPath: z.string().min(1),
+  template: z.string().min(1),
+  sections: z.array(prdSectionSchema),
+  createdAt: z.string().datetime(),
+  updatedAt: z.string().datetime(),
+});
+
+function expandHome(projectPath: string): string {
+  if (!projectPath.startsWith('~')) {
+    return projectPath;
+  }
+
+  if (projectPath === '~') {
+    return os.homedir();
+  }
+
+  if (projectPath.startsWith('~/')) {
+    return path.join(os.homedir(), projectPath.slice(2));
+  }
+
+  return projectPath;
+}
+
+function resolveProjectPath(projectPath: string): string {
+  return path.resolve(expandHome(projectPath));
+}
+
+function toSlug(value: string): string {
+  return value
+    .toLowerCase()
+    .replace(/[^a-z0-9]+/g, '-')
+    .replace(/^-+|-+$/g, '')
+    .replace(/-{2,}/g, '-');
+}
+
+function buildTimestamp(date: Date): { datePart: string; timePart: string } {
+  const iso = date.toISOString();
+  return {
+    datePart: iso.slice(0, 10).replace(/-/g, ''),
+    timePart: iso.slice(11, 19).replace(/:/g, ''),
+  };
+}
+
+function buildPrdId(name: string): string {
+  const slug = toSlug(name);
+  const { datePart, timePart } = buildTimestamp(new Date());
+  return `${slug || 'prd'}-${datePart}-${timePart}`;
+}
+
+function prdDirectory(projectPath: string): string {
+  return path.join(projectPath, PRD_DIRECTORY);
+}
+
+function prdFilePath(projectPath: string, id: string): string {
+  return path.join(prdDirectory(projectPath), `${id}.yaml`);
+}
+
+function isNodeErrorWithCode(error: unknown, code: string): boolean {
+  return (
+    typeof error === 'object' &&
+    error !== null &&
+    'code' in error &&
+    (error as { code?: string }).code === code
+  );
+}
+
+async function writeFileAtomic(filePath: string, content: string): Promise<void> {
+  const directory = path.dirname(filePath);
+  await fs.mkdir(directory, { recursive: true });
+
+  const tempPath = path.join(
+    directory,
+    `.${path.basename(filePath)}.tmp-${process.pid}-${Date.now()}-${Math.random()
+      .toString(16)
+      .slice(2)}`,
+  );
+
+  await fs.writeFile(tempPath, content, 'utf8');
+  await fs.rename(tempPath, filePath);
+}
+
+export async function createPrd(options: CreatePrdOptions): Promise<PrdDocument> {
+  const resolvedProjectPath = resolveProjectPath(options.projectPath);
+  const template = resolveTemplate(options.template);
+  const now = new Date().toISOString();
+
+  const document: PrdDocument = {
+    id: buildPrdId(options.name),
+    title: options.name.trim(),
+    status: 'draft',
+    projectPath: resolvedProjectPath,
+    template: template.id,
+    sections: template.sections.map((section) => ({
+      id: section.id,
+      title: section.title,
+      fields: Object.fromEntries(section.fields.map((field) => [field, ''])),
+    })),
+    createdAt: now,
+    updatedAt: now,
+  };
+
+  await savePrd(document);
+  return document;
+}
+
+export async function loadPrd(projectPath: string): Promise<PrdDocument> {
+  const documents = await listPrds(projectPath);
+  if (documents.length === 0) {
+    const resolvedProjectPath = resolveProjectPath(projectPath);
+    throw new Error(`No PRD documents found in ${prdDirectory(resolvedProjectPath)}`);
+  }
+
+  return documents[0]!;
+}
+
+export async function savePrd(doc: PrdDocument): Promise<void> {
+  const normalized = prdDocumentSchema.parse({
+    ...doc,
+    projectPath: resolveProjectPath(doc.projectPath),
+  });
+
+  const filePath = prdFilePath(normalized.projectPath, normalized.id);
+  const serialized = yaml.dump(normalized, {
+    noRefs: true,
+    sortKeys: false,
+    lineWidth: 120,
+  });
+
+  const content = serialized.endsWith('\n') ? serialized : `${serialized}\n`;
+  await writeFileAtomic(filePath, content);
+}
+
+export async function listPrds(projectPath: string): Promise<PrdDocument[]> {
+  const resolvedProjectPath = resolveProjectPath(projectPath);
+  const directory = prdDirectory(resolvedProjectPath);
+
+  let entries: import('node:fs').Dirent[];
+  try {
+    entries = await fs.readdir(directory, { withFileTypes: true, encoding: 'utf8' });
+  } catch (error) {
+    if (isNodeErrorWithCode(error, 'ENOENT')) {
+      return [];
+    }
+
+    throw error;
+  }
+
+  const documents: PrdDocument[] = [];
+
+  for (const entry of entries) {
+    if (!entry.isFile()) {
+      continue;
+    }
+
+    const ext = path.extname(entry.name);
+    if (!PRD_FILE_EXTENSIONS.has(ext)) {
+      continue;
+    }
+
+    const filePath = path.join(directory, entry.name);
+    const raw = await fs.readFile(filePath, 'utf8');
+
+    let parsed: unknown;
+    try {
+      parsed = yaml.load(raw);
+    } catch (error) {
+      throw new Error(`Failed to parse PRD file ${filePath}: ${String(error)}`);
+    }
+
+    const document = prdDocumentSchema.parse(parsed);
+    documents.push(document);
+  }
+
+  documents.sort((left, right) => right.updatedAt.localeCompare(left.updatedAt));
+  return documents;
+}

packages/prdy/src/templates.ts

@@ -0,0 +1,86 @@
+import type { PrdTemplate } from './types.js';
+
+export const BUILTIN_PRD_TEMPLATES: Record<string, PrdTemplate> = {
+  software: {
+    id: 'software',
+    name: 'Software Project',
+    fields: ['owner', 'status', 'scopeVersion', 'successMetrics'],
+    sections: [
+      { id: 'introduction', title: 'Introduction', fields: ['context', 'objective'] },
+      { id: 'problem-statement', title: 'Problem Statement', fields: ['painPoints'] },
+      { id: 'scope-non-goals', title: 'Scope / Non-Goals', fields: ['inScope', 'outOfScope'] },
+      { id: 'user-stories', title: 'User Stories / Requirements', fields: ['stories'] },
+      { id: 'functional-requirements', title: 'Functional Requirements', fields: ['requirements'] },
+      {
+        id: 'non-functional-requirements',
+        title: 'Non-Functional Requirements',
+        fields: ['performance', 'reliability', 'security'],
+      },
+      { id: 'acceptance-criteria', title: 'Acceptance Criteria', fields: ['criteria'] },
+      {
+        id: 'technical-considerations',
+        title: 'Technical Considerations',
+        fields: ['constraints', 'dependencies'],
+      },
+      {
+        id: 'risks-open-questions',
+        title: 'Risks / Open Questions',
+        fields: ['risks', 'openQuestions'],
+      },
+      {
+        id: 'milestones-delivery',
+        title: 'Milestones / Delivery',
+        fields: ['milestones', 'timeline'],
+      },
+    ],
+  },
+  feature: {
+    id: 'feature',
+    name: 'Feature PRD',
+    fields: ['owner', 'status', 'releaseTarget'],
+    sections: [
+      { id: 'problem-statement', title: 'Problem Statement', fields: ['problem'] },
+      { id: 'goals', title: 'Goals', fields: ['goals'] },
+      { id: 'scope', title: 'Scope', fields: ['inScope', 'outOfScope'] },
+      { id: 'user-stories', title: 'User Stories', fields: ['stories'] },
+      { id: 'requirements', title: 'Requirements', fields: ['functional', 'nonFunctional'] },
+      { id: 'acceptance-criteria', title: 'Acceptance Criteria', fields: ['criteria'] },
+      { id: 'technical-considerations', title: 'Technical Considerations', fields: ['constraints'] },
+      { id: 'risks-open-questions', title: 'Risks / Open Questions', fields: ['risks', 'questions'] },
+      { id: 'milestones', title: 'Milestones', fields: ['milestones'] },
+      { id: 'success-metrics', title: 'Success Metrics / Testing', fields: ['metrics', 'testing'] },
+    ],
+  },
+  spike: {
+    id: 'spike',
+    name: 'Research Spike',
+    fields: ['owner', 'status', 'decisionDeadline'],
+    sections: [
+      { id: 'background', title: 'Background', fields: ['context'] },
+      { id: 'research-questions', title: 'Research Questions', fields: ['questions'] },
+      { id: 'constraints', title: 'Constraints', fields: ['constraints'] },
+      { id: 'options', title: 'Options Considered', fields: ['options'] },
+      { id: 'evaluation', title: 'Evaluation Criteria', fields: ['criteria'] },
+      { id: 'findings', title: 'Findings', fields: ['findings'] },
+      { id: 'recommendation', title: 'Recommendation', fields: ['recommendation'] },
+      { id: 'risks', title: 'Risks / Unknowns', fields: ['risks', 'unknowns'] },
+      { id: 'next-steps', title: 'Next Steps', fields: ['nextSteps'] },
+      { id: 'milestones', title: 'Milestones / Delivery', fields: ['milestones'] },
+    ],
+  },
+};
+
+export function resolveTemplate(templateName?: string): PrdTemplate {
+  if (templateName === undefined || templateName.trim().length === 0) {
+    return BUILTIN_PRD_TEMPLATES.software;
+  }
+
+  const template = BUILTIN_PRD_TEMPLATES[templateName];
+  if (template === undefined) {
+    throw new Error(
+      `Unknown PRD template: ${templateName}. Expected one of: ${Object.keys(BUILTIN_PRD_TEMPLATES).join(', ')}`,
+    );
+  }
+
+  return template;
+}

packages/prdy/src/types.ts

@@ -0,0 +1,38 @@
+export type PrdStatus = 'draft' | 'review' | 'approved' | 'archived';
+
+export interface PrdTemplateSection {
+  id: string;
+  title: string;
+  fields: string[];
+}
+
+export interface PrdTemplate {
+  id: string;
+  name: string;
+  sections: PrdTemplateSection[];
+  fields: string[];
+}
+
+export interface PrdSection {
+  id: string;
+  title: string;
+  fields: Record<string, string>;
+}
+
+export interface PrdDocument {
+  id: string;
+  title: string;
+  status: PrdStatus;
+  projectPath: string;
+  template: string;
+  sections: PrdSection[];
+  createdAt: string;
+  updatedAt: string;
+}
+
+export interface CreatePrdOptions {
+  name: string;
+  projectPath: string;
+  template?: string;
+  interactive?: boolean;
+}

packages/prdy/src/wizard.ts

@@ -0,0 +1,121 @@
+import path from 'node:path';
+
+import {
+  cancel,
+  intro,
+  isCancel,
+  outro,
+  select,
+  text,
+} from '@clack/prompts';
+
+import { createPrd, savePrd } from './prd.js';
+import type { CreatePrdOptions, PrdDocument } from './types.js';
+
+interface WizardAnswers {
+  goals: string;
+  constraints: string;
+  milestones: string;
+}
+
+function updateSectionField(
+  doc: PrdDocument,
+  sectionKeyword: string,
+  value: string,
+): void {
+  const section = doc.sections.find((candidate) =>
+    candidate.id.includes(sectionKeyword),
+  );
+
+  if (section === undefined) {
+    return;
+  }
+
+  const fieldName =
+    Object.keys(section.fields).find((field) =>
+      field.toLowerCase().includes(sectionKeyword),
+    ) ?? Object.keys(section.fields)[0];
+
+  if (fieldName !== undefined) {
+    section.fields[fieldName] = value;
+  }
+}
+
+async function promptText(message: string, initialValue = ''): Promise<string> {
+  const response = await text({
+    message,
+    initialValue,
+  });
+
+  if (isCancel(response)) {
+    cancel('PRD wizard cancelled.');
+    throw new Error('PRD wizard cancelled');
+  }
+
+  return response.trim();
+}
+
+async function promptTemplate(template?: string): Promise<string> {
+  if (template !== undefined && template.trim().length > 0) {
+    return template;
+  }
+
+  const choice = await select({
+    message: 'PRD type',
+    options: [
+      { value: 'software', label: 'Software project' },
+      { value: 'feature', label: 'Feature' },
+      { value: 'spike', label: 'Research spike' },
+    ],
+  });
+
+  if (isCancel(choice)) {
+    cancel('PRD wizard cancelled.');
+    throw new Error('PRD wizard cancelled');
+  }
+
+  return choice;
+}
+
+function applyWizardAnswers(doc: PrdDocument, answers: WizardAnswers): PrdDocument {
+  updateSectionField(doc, 'goal', answers.goals);
+  updateSectionField(doc, 'constraint', answers.constraints);
+  updateSectionField(doc, 'milestone', answers.milestones);
+
+  doc.updatedAt = new Date().toISOString();
+  return doc;
+}
+
+export async function runPrdWizard(options: CreatePrdOptions): Promise<PrdDocument> {
+  intro('Mosaic PRD wizard');
+
+  const name =
+    options.name.trim().length > 0
+      ? options.name.trim()
+      : await promptText('Project name');
+  const template = await promptTemplate(options.template);
+  const goals = await promptText('Primary goals');
+  const constraints = await promptText('Key constraints');
+  const milestones = await promptText('Planned milestones');
+
+  const doc = await createPrd({
+    ...options,
+    name,
+    template,
+    interactive: true,
+  });
+
+  const updated = applyWizardAnswers(doc, {
+    goals,
+    constraints,
+    milestones,
+  });
+
+  await savePrd(updated);
+
+  outro(
+    `PRD created: ${path.join(updated.projectPath, 'docs', 'prdy', `${updated.id}.yaml`)}`,
+  );
+
+  return updated;
+}

packages/prdy/tests/prd.test.ts

@@ -0,0 +1,36 @@
+import { promises as fs } from 'node:fs';
+import os from 'node:os';
+import path from 'node:path';
+
+import { describe, expect, it } from 'vitest';
+
+import { createPrd, listPrds, loadPrd } from '../src/prd.js';
+
+describe('prd document lifecycle', () => {
+  it('creates and loads PRD documents', async () => {
+    const projectDir = await fs.mkdtemp(path.join(os.tmpdir(), 'prdy-project-'));
+
+    try {
+      const created = await createPrd({
+        name: 'User Authentication',
+        projectPath: projectDir,
+        template: 'feature',
+      });
+
+      expect(created.title).toBe('User Authentication');
+      expect(created.status).toBe('draft');
+      expect(created.id).toMatch(/^user-authentication-\d{8}-\d{6}$/);
+
+      const loaded = await loadPrd(projectDir);
+      expect(loaded.id).toBe(created.id);
+      expect(loaded.title).toBe(created.title);
+      expect(loaded.sections.length).toBeGreaterThan(0);
+
+      const listed = await listPrds(projectDir);
+      expect(listed).toHaveLength(1);
+      expect(listed[0]?.id).toBe(created.id);
+    } finally {
+      await fs.rm(projectDir, { recursive: true, force: true });
+    }
+  });
+});

packages/prdy/tests/templates.test.ts

@@ -0,0 +1,22 @@
+import { describe, expect, it } from 'vitest';
+
+import { BUILTIN_PRD_TEMPLATES } from '../src/templates.js';
+
+describe('built-in PRD templates', () => {
+  it('includes software, feature, and spike templates with required fields', () => {
+    expect(BUILTIN_PRD_TEMPLATES.software).toBeDefined();
+    expect(BUILTIN_PRD_TEMPLATES.feature).toBeDefined();
+    expect(BUILTIN_PRD_TEMPLATES.spike).toBeDefined();
+
+    for (const template of Object.values(BUILTIN_PRD_TEMPLATES)) {
+      expect(template.sections.length).toBeGreaterThan(0);
+      expect(template.fields.length).toBeGreaterThan(0);
+
+      for (const section of template.sections) {
+        expect(section.id.length).toBeGreaterThan(0);
+        expect(section.title.length).toBeGreaterThan(0);
+        expect(section.fields.length).toBeGreaterThan(0);
+      }
+    }
+  });
+});

packages/prdy/tsconfig.json

@@ -0,0 +1,5 @@
+{
+  "extends": "../../tsconfig.base.json",
+  "compilerOptions": { "outDir": "dist", "rootDir": "src" },
+  "include": ["src"]
+}

packages/quality-rails/eslint.config.js

@@ -0,0 +1,20 @@
+import tsEslintPlugin from '@typescript-eslint/eslint-plugin';
+import tsEslintParser from '@typescript-eslint/parser';
+
+export default [
+  {
+    files: ['src/**/*.ts'],
+    languageOptions: {
+      parser: tsEslintParser,
+      sourceType: 'module',
+      ecmaVersion: 'latest',
+    },
+    plugins: {
+      '@typescript-eslint': tsEslintPlugin,
+    },
+    rules: {
+      'no-console': 'off',
+      '@typescript-eslint/no-explicit-any': 'off',
+    },
+  },
+];

packages/quality-rails/package.json

@@ -0,0 +1,30 @@
+{
+  "name": "@mosaic/quality-rails",
+  "version": "0.1.0",
+  "type": "module",
+  "description": "Mosaic quality rails - TypeScript code quality scaffolder",
+  "scripts": {
+    "build": "tsc -p tsconfig.json",
+    "typecheck": "tsc --noEmit",
+    "lint": "eslint src/",
+    "test": "vitest run"
+  },
+  "dependencies": {
+    "@mosaic/types": "workspace:*",
+    "commander": "^13",
+    "js-yaml": "^4"
+  },
+  "devDependencies": {
+    "@types/node": "^22",
+    "@types/js-yaml": "^4",
+    "@typescript-eslint/eslint-plugin": "^8",
+    "@typescript-eslint/parser": "^8",
+    "eslint": "^9",
+    "typescript": "^5",
+    "vitest": "^2"
+  },
+  "publishConfig": {
+    "registry": "https://git.mosaicstack.dev/api/packages/mosaic/npm",
+    "access": "public"
+  }
+}

packages/quality-rails/src/cli.ts

@@ -0,0 +1,193 @@
+import { constants } from 'node:fs';
+import { access } from 'node:fs/promises';
+import { resolve } from 'node:path';
+import { fileURLToPath } from 'node:url';
+
+import { Command } from 'commander';
+
+import { detectProjectKind } from './detect.js';
+import { scaffoldQualityRails } from './scaffolder.js';
+import type { ProjectKind, QualityProfile, RailsConfig } from './types.js';
+
+const VALID_PROFILES: readonly QualityProfile[] = ['strict', 'standard', 'minimal'];
+
+async function fileExists(filePath: string): Promise<boolean> {
+  try {
+    await access(filePath, constants.F_OK);
+    return true;
+  } catch {
+    return false;
+  }
+}
+
+function parseProfile(rawProfile: string): QualityProfile {
+  if (VALID_PROFILES.includes(rawProfile as QualityProfile)) {
+    return rawProfile as QualityProfile;
+  }
+  throw new Error(`Invalid profile: ${rawProfile}. Use one of ${VALID_PROFILES.join(', ')}.`);
+}
+
+function defaultLinters(kind: ProjectKind): string[] {
+  if (kind === 'node') {
+    return ['eslint', 'biome'];
+  }
+
+  if (kind === 'python') {
+    return ['ruff'];
+  }
+
+  if (kind === 'rust') {
+    return ['clippy'];
+  }
+
+  return [];
+}
+
+function defaultFormatters(kind: ProjectKind): string[] {
+  if (kind === 'node') {
+    return ['prettier'];
+  }
+
+  if (kind === 'python') {
+    return ['black'];
+  }
+
+  if (kind === 'rust') {
+    return ['rustfmt'];
+  }
+
+  return [];
+}
+
+function expectedFilesForKind(kind: ProjectKind): string[] {
+  if (kind === 'node') {
+    return ['.eslintrc', 'biome.json', '.githooks/pre-commit', 'PR-CHECKLIST.md'];
+  }
+
+  if (kind === 'python') {
+    return ['pyproject.toml', '.githooks/pre-commit', 'PR-CHECKLIST.md'];
+  }
+
+  if (kind === 'rust') {
+    return ['rustfmt.toml', '.githooks/pre-commit', 'PR-CHECKLIST.md'];
+  }
+
+  return ['.githooks/pre-commit', 'PR-CHECKLIST.md'];
+}
+
+function printScaffoldResult(config: RailsConfig, filesWritten: string[], warnings: string[], commandsToRun: string[]): void {
+  console.log(`[quality-rails] initialized at ${config.projectPath}`);
+  console.log(`kind=${config.kind} profile=${config.profile}`);
+
+  if (filesWritten.length > 0) {
+    console.log('files written:');
+    for (const filePath of filesWritten) {
+      console.log(`  - ${filePath}`);
+    }
+  }
+
+  if (commandsToRun.length > 0) {
+    console.log('run next:');
+    for (const command of commandsToRun) {
+      console.log(`  - ${command}`);
+    }
+  }
+
+  if (warnings.length > 0) {
+    console.log('warnings:');
+    for (const warning of warnings) {
+      console.log(`  - ${warning}`);
+    }
+  }
+}
+
+export function createQualityRailsCli(): Command {
+  const program = new Command('mosaic');
+  const qualityRails = program.command('quality-rails').description('Manage quality rails scaffolding');
+
+  qualityRails
+    .command('init')
+    .requiredOption('--project <path>', 'Project path')
+    .option('--profile <profile>', 'strict|standard|minimal', 'standard')
+    .action(async (options: { project: string; profile: string }) => {
+      const profile = parseProfile(options.profile);
+      const projectPath = resolve(options.project);
+      const kind = await detectProjectKind(projectPath);
+
+      const config: RailsConfig = {
+        projectPath,
+        kind,
+        profile,
+        linters: defaultLinters(kind),
+        formatters: defaultFormatters(kind),
+        hooks: true,
+      };
+
+      const result = await scaffoldQualityRails(config);
+      printScaffoldResult(config, result.filesWritten, result.warnings, result.commandsToRun);
+    });
+
+  qualityRails
+    .command('check')
+    .requiredOption('--project <path>', 'Project path')
+    .action(async (options: { project: string }) => {
+      const projectPath = resolve(options.project);
+      const kind = await detectProjectKind(projectPath);
+      const expected = expectedFilesForKind(kind);
+      const missing: string[] = [];
+
+      for (const relativePath of expected) {
+        const exists = await fileExists(resolve(projectPath, relativePath));
+        if (!exists) {
+          missing.push(relativePath);
+        }
+      }
+
+      if (missing.length > 0) {
+        console.error('[quality-rails] missing files:');
+        for (const relativePath of missing) {
+          console.error(`  - ${relativePath}`);
+        }
+        process.exitCode = 1;
+        return;
+      }
+
+      console.log(`[quality-rails] all expected files present for ${kind} project`);
+    });
+
+  qualityRails
+    .command('doctor')
+    .requiredOption('--project <path>', 'Project path')
+    .action(async (options: { project: string }) => {
+      const projectPath = resolve(options.project);
+      const kind = await detectProjectKind(projectPath);
+      const expected = expectedFilesForKind(kind);
+
+      console.log(`[quality-rails] doctor for ${projectPath}`);
+      console.log(`detected project kind: ${kind}`);
+
+      for (const relativePath of expected) {
+        const exists = await fileExists(resolve(projectPath, relativePath));
+        console.log(`  - ${exists ? 'ok' : 'missing'}: ${relativePath}`);
+      }
+
+      if (kind === 'unknown') {
+        console.log('recommendation: add package.json, pyproject.toml, or Cargo.toml for better defaults.');
+      }
+    });
+
+  return program;
+}
+
+export async function runQualityRailsCli(argv: string[] = process.argv): Promise<void> {
+  const program = createQualityRailsCli();
+  await program.parseAsync(argv);
+}
+
+const entryPath = process.argv[1] ? resolve(process.argv[1]) : '';
+if (entryPath.length > 0 && entryPath === fileURLToPath(import.meta.url)) {
+  runQualityRailsCli().catch((error: unknown) => {
+    console.error(error instanceof Error ? error.message : String(error));
+    process.exit(1);
+  });
+}

packages/quality-rails/src/detect.ts

@@ -0,0 +1,30 @@
+import { constants } from 'node:fs';
+import { access } from 'node:fs/promises';
+import { join } from 'node:path';
+
+import type { ProjectKind } from './types.js';
+
+async function fileExists(filePath: string): Promise<boolean> {
+  try {
+    await access(filePath, constants.F_OK);
+    return true;
+  } catch {
+    return false;
+  }
+}
+
+export async function detectProjectKind(projectPath: string): Promise<ProjectKind> {
+  if (await fileExists(join(projectPath, 'package.json'))) {
+    return 'node';
+  }
+
+  if (await fileExists(join(projectPath, 'pyproject.toml'))) {
+    return 'python';
+  }
+
+  if (await fileExists(join(projectPath, 'Cargo.toml'))) {
+    return 'rust';
+  }
+
+  return 'unknown';
+}

packages/quality-rails/src/index.ts

@@ -0,0 +1,5 @@
+export * from './cli.js';
+export * from './detect.js';
+export * from './scaffolder.js';
+export * from './templates.js';
+export * from './types.js';

packages/quality-rails/src/scaffolder.ts

@@ -0,0 +1,201 @@
+import { spawn } from 'node:child_process';
+import { chmod, mkdir, readFile, writeFile } from 'node:fs/promises';
+import { dirname, join } from 'node:path';
+
+import {
+  biomeTemplate,
+  eslintTemplate,
+  prChecklistTemplate,
+  preCommitHookTemplate,
+  pyprojectSection,
+  rustfmtTemplate,
+} from './templates.js';
+import type { RailsConfig, ScaffoldResult } from './types.js';
+
+const PYPROJECT_START_MARKER = '# >>> mosaic-quality-rails >>>';
+const PYPROJECT_END_MARKER = '# <<< mosaic-quality-rails <<<';
+
+async function ensureDirectory(filePath: string): Promise<void> {
+  await mkdir(dirname(filePath), { recursive: true });
+}
+
+async function writeRelativeFile(
+  projectPath: string,
+  relativePath: string,
+  contents: string,
+  result: ScaffoldResult,
+): Promise<void> {
+  const absolutePath = join(projectPath, relativePath);
+  await ensureDirectory(absolutePath);
+  await writeFile(absolutePath, contents, { encoding: 'utf8', mode: 0o644 });
+  result.filesWritten.push(relativePath);
+}
+
+async function upsertPyproject(
+  projectPath: string,
+  profile: RailsConfig['profile'],
+  result: ScaffoldResult,
+): Promise<void> {
+  const pyprojectPath = join(projectPath, 'pyproject.toml');
+  const nextSection = pyprojectSection(profile);
+
+  let previous = '';
+  try {
+    previous = await readFile(pyprojectPath, 'utf8');
+  } catch {
+    previous = '';
+  }
+
+  const existingStart = previous.indexOf(PYPROJECT_START_MARKER);
+  const existingEnd = previous.indexOf(PYPROJECT_END_MARKER);
+
+  if (existingStart >= 0 && existingEnd > existingStart) {
+    const before = previous.slice(0, existingStart).trimEnd();
+    const after = previous.slice(existingEnd + PYPROJECT_END_MARKER.length).trimStart();
+    const rebuilt = [before, nextSection.trim(), after]
+      .filter((segment) => segment.length > 0)
+      .join('\n\n');
+    await writeRelativeFile(projectPath, 'pyproject.toml', `${rebuilt}\n`, result);
+    return;
+  }
+
+  const separator = previous.trim().length > 0 ? '\n\n' : '';
+  await writeRelativeFile(projectPath, 'pyproject.toml', `${previous.trimEnd()}${separator}${nextSection}`, result);
+}
+
+function runCommand(command: string, args: string[], cwd: string): Promise<void> {
+  return new Promise((resolve, reject) => {
+    const child = spawn(command, args, {
+      cwd,
+      stdio: 'ignore',
+      env: process.env,
+    });
+
+    child.on('error', reject);
+    child.on('exit', (code) => {
+      if (code === 0) {
+        resolve();
+        return;
+      }
+      reject(new Error(`Command failed (${code ?? 'unknown'}): ${command} ${args.join(' ')}`));
+    });
+  });
+}
+
+function buildNodeDevDependencies(config: RailsConfig): string[] {
+  const dependencies = new Set<string>();
+
+  if (config.linters.some((linter) => linter.toLowerCase() === 'eslint')) {
+    dependencies.add('eslint');
+    dependencies.add('@typescript-eslint/parser');
+    dependencies.add('@typescript-eslint/eslint-plugin');
+  }
+
+  if (config.linters.some((linter) => linter.toLowerCase() === 'biome')) {
+    dependencies.add('@biomejs/biome');
+  }
+
+  if (config.formatters.some((formatter) => formatter.toLowerCase() === 'prettier')) {
+    dependencies.add('prettier');
+  }
+
+  if (config.hooks) {
+    dependencies.add('husky');
+  }
+
+  return [...dependencies];
+}
+
+async function installNodeDependencies(config: RailsConfig, result: ScaffoldResult): Promise<void> {
+  const dependencies = buildNodeDevDependencies(config);
+  if (dependencies.length === 0) {
+    return;
+  }
+
+  const commandLine = `pnpm add -D ${dependencies.join(' ')}`;
+
+  if (process.env.MOSAIC_QUALITY_RAILS_SKIP_INSTALL === '1') {
+    result.commandsToRun.push(commandLine);
+    return;
+  }
+
+  try {
+    await runCommand('pnpm', ['add', '-D', ...dependencies], config.projectPath);
+  } catch (error) {
+    result.warnings.push(
+      `Failed to auto-install Node dependencies: ${error instanceof Error ? error.message : String(error)}`,
+    );
+    result.commandsToRun.push(commandLine);
+  }
+}
+
+export async function scaffoldQualityRails(config: RailsConfig): Promise<ScaffoldResult> {
+  const result: ScaffoldResult = {
+    filesWritten: [],
+    commandsToRun: [],
+    warnings: [],
+  };
+
+  const normalizedLinters = new Set(config.linters.map((linter) => linter.toLowerCase()));
+
+  if (config.kind === 'node') {
+    if (normalizedLinters.has('eslint')) {
+      await writeRelativeFile(
+        config.projectPath,
+        '.eslintrc',
+        eslintTemplate(config.profile),
+        result,
+      );
+    }
+
+    if (normalizedLinters.has('biome')) {
+      await writeRelativeFile(
+        config.projectPath,
+        'biome.json',
+        biomeTemplate(config.profile),
+        result,
+      );
+    }
+
+    await installNodeDependencies(config, result);
+  }
+
+  if (config.kind === 'python') {
+    await upsertPyproject(config.projectPath, config.profile, result);
+  }
+
+  if (config.kind === 'rust') {
+    await writeRelativeFile(
+      config.projectPath,
+      'rustfmt.toml',
+      rustfmtTemplate(config.profile),
+      result,
+    );
+  }
+
+  if (config.hooks) {
+    await writeRelativeFile(
+      config.projectPath,
+      '.githooks/pre-commit',
+      preCommitHookTemplate(config),
+      result,
+    );
+    await chmod(join(config.projectPath, '.githooks/pre-commit'), 0o755);
+    result.commandsToRun.push('git config core.hooksPath .githooks');
+  }
+
+  await writeRelativeFile(
+    config.projectPath,
+    'PR-CHECKLIST.md',
+    prChecklistTemplate(config.profile),
+    result,
+  );
+
+  if (config.kind === 'unknown') {
+    result.warnings.push(
+      'Unable to detect project kind. Generated generic rails only (hooks + PR checklist).',
+    );
+  }
+
+  return result;
+}

packages/quality-rails/src/templates.ts

@@ -0,0 +1,182 @@
+import type { QualityProfile, RailsConfig } from './types.js';
+
+const PROFILE_TO_MAX_WARNINGS: Record<QualityProfile, number> = {
+  strict: 0,
+  standard: 10,
+  minimal: 50,
+};
+
+const PROFILE_TO_LINE_LENGTH: Record<QualityProfile, number> = {
+  strict: 100,
+  standard: 110,
+  minimal: 120,
+};
+
+export function eslintTemplate(profile: QualityProfile): string {
+  return `${JSON.stringify(
+    {
+      root: true,
+      parser: '@typescript-eslint/parser',
+      plugins: ['@typescript-eslint'],
+      extends: ['eslint:recommended', 'plugin:@typescript-eslint/recommended'],
+      env: {
+        node: true,
+        es2022: true,
+      },
+      parserOptions: {
+        ecmaVersion: 'latest',
+        sourceType: 'module',
+      },
+      rules: {
+        'no-console': profile === 'strict' ? 'error' : 'warn',
+        '@typescript-eslint/no-explicit-any':
+          profile === 'minimal' ? 'off' : profile === 'strict' ? 'error' : 'warn',
+        '@typescript-eslint/explicit-function-return-type':
+          profile === 'strict' ? 'warn' : 'off',
+        'max-lines-per-function': [
+          profile === 'minimal' ? 'off' : 'warn',
+          {
+            max: profile === 'strict' ? 60 : 100,
+            skipBlankLines: true,
+            skipComments: true,
+          },
+        ],
+      },
+    },
+    null,
+    2,
+  )}\n`;
+}
+
+export function biomeTemplate(profile: QualityProfile): string {
+  return `${JSON.stringify(
+    {
+      '$schema': 'https://biomejs.dev/schemas/1.8.3/schema.json',
+      formatter: {
+        enabled: true,
+        indentStyle: 'space',
+        indentWidth: 2,
+        lineWidth: PROFILE_TO_LINE_LENGTH[profile],
+      },
+      linter: {
+        enabled: true,
+        rules: {
+          recommended: true,
+          suspicious: {
+            noConsole: profile === 'strict' ? 'error' : 'warn',
+          },
+          complexity: {
+            noExcessiveCognitiveComplexity:
+              profile === 'strict' ? 'warn' : profile === 'standard' ? 'info' : 'off',
+          },
+        },
+      },
+      javascript: {
+        formatter: {
+          quoteStyle: 'single',
+          trailingCommas: 'all',
+        },
+      },
+    },
+    null,
+    2,
+  )}\n`;
+}
+
+export function pyprojectSection(profile: QualityProfile): string {
+  const lineLength = PROFILE_TO_LINE_LENGTH[profile];
+  return [
+    '# >>> mosaic-quality-rails >>>',
+    '[tool.ruff]',
+    `line-length = ${lineLength}`,
+    'target-version = "py311"',
+    '',
+    '[tool.ruff.lint]',
+    'select = ["E", "F", "I", "UP", "B"]',
+    `ignore = ${profile === 'minimal' ? '[]' : '["E501"]'}`,
+    '',
+    '[tool.black]',
+    `line-length = ${lineLength}`,
+    '',
+    '# <<< mosaic-quality-rails <<<',
+    '',
+  ].join('\n');
+}
+
+export function rustfmtTemplate(profile: QualityProfile): string {
+  const maxWidth = PROFILE_TO_LINE_LENGTH[profile];
+  const useSmallHeuristics = profile === 'strict' ? 'Max' : 'Default';
+
+  return [
+    `max_width = ${maxWidth}`,
+    `use_small_heuristics = "${useSmallHeuristics}"`,
+    `imports_granularity = "${profile === 'minimal' ? 'Crate' : 'Module'}"`,
+    `group_imports = "${profile === 'strict' ? 'StdExternalCrate' : 'Preserve'}"`,
+    '',
+  ].join('\n');
+}
+
+function resolveHookCommands(config: RailsConfig): string[] {
+  const commands: string[] = [];
+
+  if (config.kind === 'node') {
+    if (config.linters.some((linter) => linter.toLowerCase() === 'eslint')) {
+      commands.push('pnpm lint');
+    }
+    if (config.linters.some((linter) => linter.toLowerCase() === 'biome')) {
+      commands.push('pnpm biome check .');
+    }
+    if (config.formatters.some((formatter) => formatter.toLowerCase() === 'prettier')) {
+      commands.push('pnpm prettier --check .');
+    }
+    commands.push('pnpm test --if-present');
+  }
+
+  if (config.kind === 'python') {
+    commands.push('ruff check .');
+    commands.push('black --check .');
+  }
+
+  if (config.kind === 'rust') {
+    commands.push('cargo fmt --check');
+    commands.push('cargo clippy --all-targets --all-features -- -D warnings');
+  }
+
+  if (commands.length === 0) {
+    commands.push('echo "No quality commands configured for this project kind"');
+  }
+
+  return commands;
+}
+
+export function preCommitHookTemplate(config: RailsConfig): string {
+  const commands = resolveHookCommands(config)
+    .map((command) => `${command} || exit 1`)
+    .join('\n');
+
+  return [
+    '#!/usr/bin/env sh',
+    'set -eu',
+    '',
+    'echo "[quality-rails] Running pre-commit checks..."',
+    commands,
+    'echo "[quality-rails] Checks passed."',
+    '',
+  ].join('\n');
+}
+
+export function prChecklistTemplate(profile: QualityProfile): string {
+  return [
+    '# Code Review Checklist',
+    '',
+    `Profile: **${profile}**`,
+    '',
+    '- [ ] Requirements mapped to tests',
+    '- [ ] Error handling covers unhappy paths',
+    '- [ ] Lint and typecheck are clean',
+    '- [ ] Test suite passes',
+    '- [ ] Security-sensitive paths reviewed',
+    `- [ ] Warnings count <= ${PROFILE_TO_MAX_WARNINGS[profile]}`,
+    '',
+  ].join('\n');
+}

packages/quality-rails/src/types.ts

@@ -0,0 +1,18 @@
+export type ProjectKind = 'node' | 'python' | 'rust' | 'unknown';
+
+export type QualityProfile = 'strict' | 'standard' | 'minimal';
+
+export interface RailsConfig {
+  projectPath: string;
+  kind: ProjectKind;
+  profile: QualityProfile;
+  linters: string[];
+  formatters: string[];
+  hooks: boolean;
+}
+
+export interface ScaffoldResult {
+  filesWritten: string[];
+  commandsToRun: string[];
+  warnings: string[];
+}

packages/quality-rails/tests/detect.test.ts

@@ -0,0 +1,40 @@
+import { mkdtemp, rm, writeFile } from 'node:fs/promises';
+import { tmpdir } from 'node:os';
+import { join } from 'node:path';
+
+import { describe, expect, it } from 'vitest';
+
+import { detectProjectKind } from '../src/detect.js';
+
+async function withTempDir(run: (directory: string) => Promise<void>): Promise<void> {
+  const directory = await mkdtemp(join(tmpdir(), 'quality-rails-detect-'));
+  try {
+    await run(directory);
+  } finally {
+    await rm(directory, { recursive: true, force: true });
+  }
+}
+
+describe('detectProjectKind', () => {
+  it('returns node when package.json exists', async () => {
+    await withTempDir(async (directory) => {
+      await writeFile(join(directory, 'package.json'), '{"name":"fixture"}\n', 'utf8');
+
+      await expect(detectProjectKind(directory)).resolves.toBe('node');
+    });
+  });
+
+  it('returns python when pyproject.toml exists and package.json does not', async () => {
+    await withTempDir(async (directory) => {
+      await writeFile(join(directory, 'pyproject.toml'), '[project]\nname = "fixture"\n', 'utf8');
+
+      await expect(detectProjectKind(directory)).resolves.toBe('python');
+    });
+  });
+
+  it('returns unknown when no known project files exist', async () => {
+    await withTempDir(async (directory) => {
+      await expect(detectProjectKind(directory)).resolves.toBe('unknown');
+    });
+  });
+});

packages/quality-rails/tests/scaffolder.test.ts

@@ -0,0 +1,57 @@
+import { mkdtemp, readFile, rm, writeFile } from 'node:fs/promises';
+import { tmpdir } from 'node:os';
+import { join } from 'node:path';
+
+import { describe, expect, it } from 'vitest';
+
+import { scaffoldQualityRails } from '../src/scaffolder.js';
+import type { RailsConfig } from '../src/types.js';
+
+async function withTempDir(run: (directory: string) => Promise<void>): Promise<void> {
+  const directory = await mkdtemp(join(tmpdir(), 'quality-rails-scaffold-'));
+  try {
+    await run(directory);
+  } finally {
+    await rm(directory, { recursive: true, force: true });
+  }
+}
+
+describe('scaffoldQualityRails', () => {
+  it('writes expected node quality rails files', async () => {
+    await withTempDir(async (directory) => {
+      await writeFile(join(directory, 'package.json'), '{"name":"fixture"}\n', 'utf8');
+
+      const previous = process.env.MOSAIC_QUALITY_RAILS_SKIP_INSTALL;
+      process.env.MOSAIC_QUALITY_RAILS_SKIP_INSTALL = '1';
+
+      const config: RailsConfig = {
+        projectPath: directory,
+        kind: 'node',
+        profile: 'strict',
+        linters: ['eslint', 'biome'],
+        formatters: ['prettier'],
+        hooks: true,
+      };
+
+      const result = await scaffoldQualityRails(config);
+
+      process.env.MOSAIC_QUALITY_RAILS_SKIP_INSTALL = previous;
+
+      await expect(readFile(join(directory, '.eslintrc'), 'utf8')).resolves.toContain('parser');
+      await expect(readFile(join(directory, 'biome.json'), 'utf8')).resolves.toContain('"formatter"');
+      await expect(readFile(join(directory, '.githooks', 'pre-commit'), 'utf8')).resolves.toContain('pnpm lint');
+      await expect(readFile(join(directory, 'PR-CHECKLIST.md'), 'utf8')).resolves.toContain('Code Review Checklist');
+
+      expect(result.filesWritten).toEqual(
+        expect.arrayContaining([
+          '.eslintrc',
+          'biome.json',
+          '.githooks/pre-commit',
+          'PR-CHECKLIST.md',
+        ]),
+      );
+      expect(result.commandsToRun).toContain('git config core.hooksPath .githooks');
+      expect(result.warnings).toHaveLength(0);
+    });
+  });
+});

packages/quality-rails/tsconfig.json

@@ -0,0 +1,5 @@
+{
+  "extends": "../../tsconfig.base.json",
+  "compilerOptions": { "outDir": "dist", "rootDir": "src" },
+  "include": ["src"]
+}

packages/types/src/index.ts

@@ -340,3 +340,315 @@ export interface WizardState {
   readonly runtimes: RuntimeState;
   readonly selectedSkills: readonly string[];
 }
+
+// === Brain (Structured Data) ===
+
+export type BrainDomain =
+  | 'work'
+  | 'software-dev'
+  | 'homelab'
+  | 'family'
+  | 'marriage'
+  | 'finances'
+  | 'fitness'
+  | 'music'
+  | 'home-improvement'
+  | 'woodworking'
+  | 'home'
+  | 'consulting'
+  | 'personal';
+
+export type BrainTaskStatus =
+  | 'backlog'
+  | 'scheduled'
+  | 'in-progress'
+  | 'blocked'
+  | 'done'
+  | 'cancelled';
+
+export type BrainProjectStatus =
+  | 'planning'
+  | 'active'
+  | 'paused'
+  | 'blocked'
+  | 'completed'
+  | 'archived';
+
+export type BrainAgentStatus = 'active' | 'idle' | 'blocked' | 'completed';
+
+export type BrainEventType =
+  | 'meeting'
+  | 'deadline'
+  | 'maintenance'
+  | 'event'
+  | 'recurring'
+  | 'milestone'
+  | 'task'
+  | 'constraint'
+  | 'client-work'
+  | 'appointment'
+  | 'reminder'
+  | 'conflict'
+  | 'time-off';
+
+export type BrainEventStatus =
+  | 'scheduled'
+  | 'confirmed'
+  | 'tentative'
+  | 'completed'
+  | 'cancelled'
+  | 'done'
+  | 'blocked'
+  | 'postponed'
+  | 'deferred'
+  | 'in-progress'
+  | 'pending-approval'
+  | 'canceled'
+  | 'needs-resolution';
+
+export type BrainMissionStatus =
+  | 'planning'
+  | 'active'
+  | 'blocked'
+  | 'completed'
+  | 'cancelled';
+
+// --- Brain: Task ---
+
+export interface BrainTask {
+  readonly id: string;
+  readonly title: string;
+  readonly domain: BrainDomain;
+  readonly project?: string | null;
+  readonly priority: TaskPriority;
+  readonly status: BrainTaskStatus;
+  readonly progress?: number | null;
+  readonly due?: string | null;
+  readonly blocks?: readonly string[];
+  readonly blocked_by?: readonly string[];
+  readonly related?: readonly string[];
+  readonly canonical_source?: string | null;
+  readonly assignee?: string | null;
+  readonly created: string;
+  readonly updated: string;
+  readonly notes?: string | null;
+  readonly notes_nontechnical?: string | null;
+}
+
+// --- Brain: Project ---
+
+export interface BrainProject {
+  readonly id: string;
+  readonly name: string;
+  readonly description?: string | null;
+  readonly domain: BrainDomain;
+  readonly status: BrainProjectStatus;
+  readonly priority: number;
+  readonly progress?: number | null;
+  readonly repo?: string | null;
+  readonly branch?: string | null;
+  readonly current_milestone?: string | null;
+  readonly next_milestone?: string | null;
+  readonly blocker?: string | null;
+  readonly owner?: string | null;
+  readonly docs_path?: string | null;
+  readonly created: string;
+  readonly updated: string;
+  readonly notes?: string | null;
+  readonly notes_nontechnical?: string | null;
+}
+
+// --- Brain: Event ---
+
+export interface BrainEvent {
+  readonly id: string;
+  readonly title: string;
+  readonly date: string;
+  readonly end_date?: string | null;
+  readonly time?: string | null;
+  readonly end_time?: string | null;
+  readonly domain: BrainDomain;
+  readonly type: BrainEventType;
+  readonly status?: BrainEventStatus;
+  readonly priority?: TaskPriority | null;
+  readonly recur?: boolean | null;
+  readonly recur_rate?: string | null;
+  readonly recur_start?: string | null;
+  readonly recur_end?: string | null;
+  readonly location?: string | null;
+  readonly project?: string | null;
+  readonly related_task?: string | null;
+  readonly related_tasks?: readonly string[];
+  readonly notes?: string | null;
+  readonly gcal_id?: string | null;
+  readonly ics_uid?: string | null;
+}
+
+// --- Brain: Agent ---
+
+export interface BrainAgent {
+  readonly id: string;
+  readonly project: string;
+  readonly focus?: string | null;
+  readonly repo?: string | null;
+  readonly branch?: string | null;
+  readonly status: BrainAgentStatus;
+  readonly workload?: 'light' | 'medium' | 'heavy' | null;
+  readonly next_step?: string | null;
+  readonly blocker?: string | null;
+  readonly updated: string;
+}
+
+// --- Brain: Ticket ---
+
+export interface BrainTicket {
+  readonly id: string;
+  readonly title: string;
+  readonly status: number;
+  readonly priority: number;
+  readonly urgency: number;
+  readonly impact: number;
+  readonly date_creation: string;
+  readonly date_mod: string;
+  readonly content?: string | null;
+  readonly assigned_to?: string | null;
+}
+
+// --- Brain: Appreciation ---
+
+export interface BrainAppreciation {
+  readonly date: string;
+  readonly from: 'jason' | 'melanie';
+  readonly to: 'jason' | 'melanie';
+  readonly text: string;
+}
+
+// --- Brain: Mission ---
+
+export interface BrainMission {
+  readonly id: string;
+  readonly title: string;
+  readonly project: string;
+  readonly prd_path?: string | null;
+  readonly status: BrainMissionStatus;
+  readonly created: string;
+  readonly updated: string;
+  readonly notes?: string | null;
+}
+
+// --- Brain: Mission Task ---
+
+export interface BrainMissionTask {
+  readonly id: string;
+  readonly mission_id: string;
+  readonly title: string;
+  readonly phase?: string | null;
+  readonly status: BrainTaskStatus;
+  readonly priority: TaskPriority;
+  readonly dependencies: readonly string[];
+  readonly assigned_to?: string | null;
+  readonly pr?: string | null;
+  readonly order: number;
+  readonly created: string;
+  readonly updated: string;
+  readonly completed_at?: string | null;
+  readonly notes?: string | null;
+}
+
+// --- Brain: Filter/Query Types ---
+
+export interface BrainTaskFilters {
+  readonly status?: BrainTaskStatus;
+  readonly priority?: TaskPriority;
+  readonly domain?: BrainDomain;
+  readonly project?: string;
+  readonly due_before?: string;
+  readonly due_after?: string;
+  readonly assignee?: string;
+  readonly limit?: number;
+}
+
+export interface BrainProjectFilters {
+  readonly status?: BrainProjectStatus;
+  readonly domain?: BrainDomain;
+  readonly priority_min?: number;
+  readonly priority_max?: number;
+  readonly limit?: number;
+}
+
+export interface BrainEventFilters {
+  readonly date_from?: string;
+  readonly date_to?: string;
+  readonly domain?: BrainDomain;
+  readonly type?: BrainEventType;
+  readonly status?: BrainEventStatus;
+  readonly limit?: number;
+}
+
+export interface BrainMissionFilters {
+  readonly status?: BrainMissionStatus;
+  readonly project?: string;
+  readonly limit?: number;
+}
+
+export interface BrainMissionTaskFilters {
+  readonly mission_id: string;
+  readonly status?: BrainTaskStatus;
+  readonly phase?: string;
+  readonly priority?: TaskPriority;
+}
+
+// --- Brain: Computed Response Types ---
+
+export interface BrainMissionSummary extends BrainMission {
+  readonly task_count: number;
+  readonly completed_count: number;
+  readonly progress: number;
+  readonly next_available: readonly BrainMissionTask[];
+  readonly blocked_tasks: readonly BrainMissionTask[];
+}
+
+export interface BrainTodaySummary {
+  readonly date: string;
+  readonly events_today: readonly BrainEvent[];
+  readonly events_upcoming: readonly BrainEvent[];
+  readonly tasks_near_term: readonly BrainTask[];
+  readonly tasks_blocked: readonly BrainTask[];
+  readonly tasks_stale: readonly BrainTask[];
+  readonly tasks_almost_done: readonly BrainTask[];
+  readonly active_missions: readonly BrainMissionSummary[];
+  readonly stats: BrainStats;
+}
+
+export interface BrainStats {
+  readonly tasks: number;
+  readonly projects: number;
+  readonly events: number;
+  readonly agents: number;
+  readonly tickets: number;
+  readonly missions: number;
+  readonly tasks_by_status: Readonly<Record<string, number>>;
+  readonly tasks_by_domain: Readonly<Record<string, number>>;
+  readonly projects_by_status: Readonly<Record<string, number>>;
+}
+
+export interface BrainStaleReport {
+  readonly days: number;
+  readonly tasks: readonly BrainTask[];
+  readonly projects: readonly BrainProject[];
+}
+
+export interface BrainAuditResult {
+  readonly orphan_refs: readonly string[];
+  readonly broken_dependencies: readonly string[];
+  readonly missing_required_fields: readonly string[];
+  readonly duplicate_ids: readonly string[];
+}
+
+export interface BrainSearchResult {
+  readonly collection: string;
+  readonly id: string;
+  readonly title: string;
+  readonly match_context: string;
+  readonly score: number;
+}