chore: bump @mosaic/mosaic and @mosaic/cli to 0.0.4

git pull --rebase fails with 'cannot pull with rebase: You have
unstaged changes' when the skills repo has local modifications.

Fix: detect dirty index/worktree, stash before pull, restore after.
Also gracefully handle pull failures (warn and continue with existing
checkout) and stash pop conflicts.

README.md

@@ -0,0 +1,244 @@
+# Mosaic Stack
+
+Self-hosted, multi-user AI agent platform. One config, every runtime, same standards.
+
+Mosaic gives you a unified launcher for Claude Code, Codex, OpenCode, and Pi — injecting consistent system prompts, guardrails, skills, and mission context into every session. A NestJS gateway provides the API surface, a Next.js dashboard gives you the UI, and a plugin system connects Discord, Telegram, and more.
+
+## Quick Install
+
+```bash
+bash <(curl -fsSL https://git.mosaicstack.dev/mosaic/mosaic-stack/raw/branch/main/tools/install.sh)
+```
+
+This installs both components:
+
+| Component       | What                                                  | Where                |
+| --------------- | ----------------------------------------------------- | -------------------- |
+| **Framework**   | Bash launcher, guides, runtime configs, tools, skills | `~/.config/mosaic/`  |
+| **@mosaic/cli** | TUI, gateway client, wizard, auto-updater             | `~/.npm-global/bin/` |
+
+After install, set up your agent identity:
+
+```bash
+mosaic init          # Interactive wizard
+```
+
+### Requirements
+
+- Node.js ≥ 20
+- npm (for global @mosaic/cli install)
+- One or more runtimes: [Claude Code](https://docs.anthropic.com/en/docs/claude-code), [Codex](https://github.com/openai/codex), [OpenCode](https://opencode.ai), or [Pi](https://github.com/mariozechner/pi-coding-agent)
+
+## Usage
+
+### Launching Agent Sessions
+
+```bash
+mosaic pi                    # Launch Pi with Mosaic injection
+mosaic claude                # Launch Claude Code with Mosaic injection
+mosaic codex                 # Launch Codex with Mosaic injection
+mosaic opencode              # Launch OpenCode with Mosaic injection
+
+mosaic yolo claude           # Claude with dangerous-permissions mode
+mosaic yolo pi               # Pi in yolo mode
+```
+
+The launcher verifies your config, checks for `SOUL.md`, injects your `AGENTS.md` standards into the runtime, and forwards all arguments.
+
+### TUI & Gateway
+
+```bash
+mosaic tui                   # Interactive TUI connected to the gateway
+mosaic login                 # Authenticate with a gateway instance
+mosaic sessions list         # List active agent sessions
+```
+
+### Management
+
+```bash
+mosaic doctor                # Health audit — detect drift and missing files
+mosaic sync                  # Sync skills from canonical source
+mosaic update                # Check for and install CLI updates
+mosaic wizard                # Full guided setup wizard
+mosaic bootstrap <path>      # Bootstrap a repo with Mosaic standards
+mosaic coord init            # Initialize a new orchestration mission
+mosaic prdy init             # Create a PRD via guided session
+```
+
+## Development
+
+### Prerequisites
+
+- Node.js ≥ 20
+- pnpm 10.6+
+- Docker & Docker Compose
+
+### Setup
+
+```bash
+git clone git@git.mosaicstack.dev:mosaic/mosaic-stack.git
+cd mosaic-stack
+
+# Start infrastructure (Postgres, Valkey, Jaeger)
+docker compose up -d
+
+# Install dependencies
+pnpm install
+
+# Run migrations
+pnpm --filter @mosaic/db run db:migrate
+
+# Start all services in dev mode
+pnpm dev
+```
+
+### Infrastructure
+
+Docker Compose provides:
+
+| Service               | Port      | Purpose                |
+| --------------------- | --------- | ---------------------- |
+| PostgreSQL (pgvector) | 5433      | Primary database       |
+| Valkey                | 6380      | Task queue + caching   |
+| Jaeger                | 16686     | Distributed tracing UI |
+| OTEL Collector        | 4317/4318 | Telemetry ingestion    |
+
+### Quality Gates
+
+```bash
+pnpm typecheck               # TypeScript type checking (all packages)
+pnpm lint                    # ESLint (all packages)
+pnpm test                    # Vitest (all packages)
+pnpm format:check            # Prettier check
+pnpm format                  # Prettier auto-fix
+```
+
+### CI
+
+Woodpecker CI runs on every push:
+
+- `pnpm install --frozen-lockfile`
+- Database migration against a fresh Postgres
+- `pnpm test` (Turbo-orchestrated across all packages)
+
+npm packages are published to the Gitea package registry on main merges.
+
+## Architecture
+
+```
+mosaic-stack/
+├── apps/
+│   ├── gateway/             NestJS API + WebSocket hub (Fastify, Socket.IO, OTEL)
+│   └── web/                 Next.js dashboard (React 19, Tailwind)
+├── packages/
+│   ├── cli/                 Mosaic CLI — TUI, gateway client, wizard
+│   ├── mosaic/              Framework — wizard, runtime detection, update checker
+│   ├── types/               Shared TypeScript contracts (Socket.IO typed events)
+│   ├── db/                  Drizzle ORM schema + migrations (pgvector)
+│   ├── auth/                BetterAuth configuration
+│   ├── brain/               Data layer (PG-backed)
+│   ├── queue/               Valkey task queue + MCP
+│   ├── coord/               Mission coordination
+│   ├── forge/               Multi-stage AI pipeline (intake → board → plan → code → review)
+│   ├── macp/                MACP protocol — credential resolution, gate runner, events
+│   ├── agent/               Agent session management
+│   ├── memory/              Agent memory layer
+│   ├── log/                 Structured logging
+│   ├── prdy/                PRD creation and validation
+│   ├── quality-rails/       Quality templates (TypeScript, Next.js, monorepo)
+│   └── design-tokens/       Shared design tokens
+├── plugins/
+│   ├── discord/             Discord channel plugin (discord.js)
+│   ├── telegram/            Telegram channel plugin (Telegraf)
+│   ├── macp/                OpenClaw MACP runtime plugin
+│   └── mosaic-framework/    OpenClaw framework injection plugin
+├── tools/
+│   └── install.sh           Unified installer (framework + npm CLI)
+├── scripts/agent/           Agent session lifecycle scripts
+├── docker-compose.yml       Dev infrastructure
+└── .woodpecker/             CI pipeline configs
+```
+
+### Key Design Decisions
+
+- **Gateway is the single API surface** — all clients (TUI, web, Discord, Telegram) connect through it
+- **ESM everywhere** — `"type": "module"`, `.js` extensions in imports, NodeNext resolution
+- **Socket.IO typed events** — defined in `@mosaic/types`, enforced at compile time
+- **OTEL auto-instrumentation** — loads before NestJS bootstrap
+- **Explicit `@Inject()` decorators** — required since tsx/esbuild doesn't emit decorator metadata
+
+### Framework (`~/.config/mosaic/`)
+
+The framework is the bash-based standards layer installed to every developer machine:
+
+```
+~/.config/mosaic/
+├── AGENTS.md              ← Central standards (loaded into every runtime)
+├── SOUL.md                ← Agent identity (name, style, guardrails)
+├── USER.md                ← User profile (name, timezone, preferences)
+├── TOOLS.md               ← Machine-level tool reference
+├── bin/mosaic             ← Unified launcher (claude, codex, opencode, pi, yolo)
+├── guides/                ← E2E delivery, orchestrator protocol, PRD, etc.
+├── runtime/               ← Per-runtime configs (claude/, codex/, opencode/, pi/)
+├── skills/                ← Universal skills (synced from agent-skills repo)
+├── tools/                 ← Tool suites (orchestrator, git, quality, prdy, etc.)
+└── memory/                ← Persistent agent memory (preserved across upgrades)
+```
+
+### Forge Pipeline
+
+Forge is a multi-stage AI pipeline for autonomous feature delivery:
+
+```
+Intake → Discovery → Board Review → Planning (3 stages) → Coding → Review → Remediation → Test → Deploy
+```
+
+Each stage has a dispatch mode (`exec` for research/review, `yolo` for coding), quality gates, and timeouts. The board review uses multiple AI personas (CEO, CTO, CFO, COO + specialists) to evaluate briefs before committing resources.
+
+## Upgrading
+
+Run the installer again — it handles upgrades automatically:
+
+```bash
+bash <(curl -fsSL https://git.mosaicstack.dev/mosaic/mosaic-stack/raw/branch/main/tools/install.sh)
+```
+
+Or use the CLI:
+
+```bash
+mosaic update                # Check + install CLI updates
+mosaic update --check        # Check only, don't install
+```
+
+The CLI also performs a background update check on every invocation (cached for 1 hour).
+
+### Installer Flags
+
+```bash
+bash tools/install.sh --check        # Version check only
+bash tools/install.sh --framework    # Framework only (skip npm CLI)
+bash tools/install.sh --cli          # npm CLI only (skip framework)
+bash tools/install.sh --ref v1.0     # Install from a specific git ref
+```
+
+## Contributing
+
+```bash
+# Create a feature branch
+git checkout -b feat/my-feature
+
+# Make changes, then verify
+pnpm typecheck && pnpm lint && pnpm test && pnpm format:check
+
+# Commit (husky runs lint-staged automatically)
+git commit -m "feat: description of change"
+
+# Push and create PR
+git push -u origin feat/my-feature
+```
+
+DTOs go in `*.dto.ts` files at module boundaries. Scratchpads (`docs/scratchpads/`) are mandatory for non-trivial tasks. See `AGENTS.md` for the full standards reference.
+
+## License
+
+Proprietary — all rights reserved.

apps/gateway/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/gateway",
-  "version": "0.0.0",
+  "version": "0.0.2",
   "private": true,
   "type": "module",
   "main": "dist/main.js",

apps/gateway/src/agent/agent.service.ts

@@ -23,6 +23,7 @@ import { createFileTools } from './tools/file-tools.js';
 import { createGitTools } from './tools/git-tools.js';
 import { createShellTools } from './tools/shell-tools.js';
 import { createWebTools } from './tools/web-tools.js';
+import { createSearchTools } from './tools/search-tools.js';
 import type { SessionInfoDto, SessionMetrics } from './session.dto.js';
 import { SystemOverrideService } from '../preferences/system-override.service.js';
 import { PreferencesService } from '../preferences/preferences.service.js';
@@ -146,6 +147,7 @@ export class AgentService implements OnModuleDestroy {
       ...createGitTools(sandboxDir),
       ...createShellTools(sandboxDir),
       ...createWebTools(),
+      ...createSearchTools(),
     ];
   }
 

apps/gateway/src/agent/tools/file-tools.ts

@@ -190,5 +190,169 @@ export function createFileTools(baseDir: string): ToolDefinition[] {
     },
   };
 
-  return [readFileTool, writeFileTool, listDirectoryTool];
+  const editFileTool: ToolDefinition = {
+    name: 'fs_edit_file',
+    label: 'Edit File',
+    description:
+      'Make targeted text replacements in a file. Each edit replaces an exact match of oldText with newText. ' +
+      'All edits are matched against the original file content (not incrementally). ' +
+      'Each oldText must be unique in the file and edits must not overlap.',
+    parameters: Type.Object({
+      path: Type.String({
+        description: 'File path (relative to sandbox base or absolute within it)',
+      }),
+      edits: Type.Array(
+        Type.Object({
+          oldText: Type.String({
+            description: 'Exact text to find and replace (must be unique in the file)',
+          }),
+          newText: Type.String({ description: 'Replacement text' }),
+        }),
+        { description: 'One or more targeted replacements', minItems: 1 },
+      ),
+    }),
+    async execute(_toolCallId, params) {
+      const { path, edits } = params as {
+        path: string;
+        edits: Array<{ oldText: string; newText: string }>;
+      };
+
+      let safePath: string;
+      try {
+        safePath = guardPath(path, baseDir);
+      } catch (err) {
+        if (err instanceof SandboxEscapeError) {
+          return {
+            content: [{ type: 'text' as const, text: `Error: ${err.message}` }],
+            details: undefined,
+          };
+        }
+        return {
+          content: [{ type: 'text' as const, text: `Error: ${String(err)}` }],
+          details: undefined,
+        };
+      }
+
+      try {
+        const info = await stat(safePath);
+        if (!info.isFile()) {
+          return {
+            content: [{ type: 'text' as const, text: `Error: path is not a file: ${path}` }],
+            details: undefined,
+          };
+        }
+        if (info.size > MAX_READ_BYTES) {
+          return {
+            content: [
+              {
+                type: 'text' as const,
+                text: `Error: file too large for editing (${info.size} bytes, limit ${MAX_READ_BYTES} bytes)`,
+              },
+            ],
+            details: undefined,
+          };
+        }
+      } catch (err) {
+        return {
+          content: [{ type: 'text' as const, text: `Error reading file: ${String(err)}` }],
+          details: undefined,
+        };
+      }
+
+      let content: string;
+      try {
+        content = await readFile(safePath, { encoding: 'utf8' });
+      } catch (err) {
+        return {
+          content: [{ type: 'text' as const, text: `Error reading file: ${String(err)}` }],
+          details: undefined,
+        };
+      }
+
+      // Validate all edits before applying any
+      const errors: string[] = [];
+      for (let i = 0; i < edits.length; i++) {
+        const edit = edits[i]!;
+        const occurrences = content.split(edit.oldText).length - 1;
+        if (occurrences === 0) {
+          errors.push(`Edit ${i + 1}: oldText not found in file`);
+        } else if (occurrences > 1) {
+          errors.push(`Edit ${i + 1}: oldText matches ${occurrences} locations (must be unique)`);
+        }
+      }
+
+      // Check for overlapping edits
+      if (errors.length === 0) {
+        const positions = edits.map((edit, i) => ({
+          index: i,
+          start: content.indexOf(edit.oldText),
+          end: content.indexOf(edit.oldText) + edit.oldText.length,
+        }));
+        positions.sort((a, b) => a.start - b.start);
+        for (let i = 1; i < positions.length; i++) {
+          if (positions[i]!.start < positions[i - 1]!.end) {
+            errors.push(
+              `Edits ${positions[i - 1]!.index + 1} and ${positions[i]!.index + 1} overlap`,
+            );
+          }
+        }
+      }
+
+      if (errors.length > 0) {
+        return {
+          content: [
+            {
+              type: 'text' as const,
+              text: `Edit validation failed:\n${errors.join('\n')}`,
+            },
+          ],
+          details: undefined,
+        };
+      }
+
+      // Apply edits: process from end to start to preserve positions
+      const positions = edits.map((edit) => ({
+        edit,
+        start: content.indexOf(edit.oldText),
+      }));
+      positions.sort((a, b) => b.start - a.start); // reverse order
+
+      let result = content;
+      for (const { edit } of positions) {
+        result = result.replace(edit.oldText, edit.newText);
+      }
+
+      if (Buffer.byteLength(result, 'utf8') > MAX_WRITE_BYTES) {
+        return {
+          content: [
+            {
+              type: 'text' as const,
+              text: `Error: resulting file too large (limit ${MAX_WRITE_BYTES} bytes)`,
+            },
+          ],
+          details: undefined,
+        };
+      }
+
+      try {
+        await writeFile(safePath, result, { encoding: 'utf8' });
+        return {
+          content: [
+            {
+              type: 'text' as const,
+              text: `File edited successfully: ${path} (${edits.length} edit(s) applied)`,
+            },
+          ],
+          details: undefined,
+        };
+      } catch (err) {
+        return {
+          content: [{ type: 'text' as const, text: `Error writing file: ${String(err)}` }],
+          details: undefined,
+        };
+      }
+    },
+  };
+
+  return [readFileTool, writeFileTool, listDirectoryTool, editFileTool];
 }

apps/gateway/src/agent/tools/index.ts

@@ -2,6 +2,7 @@ export { createBrainTools } from './brain-tools.js';
 export { createCoordTools } from './coord-tools.js';
 export { createFileTools } from './file-tools.js';
 export { createGitTools } from './git-tools.js';
+export { createSearchTools } from './search-tools.js';
 export { createShellTools } from './shell-tools.js';
 export { createWebTools } from './web-tools.js';
 export { createSkillTools } from './skill-tools.js';

apps/gateway/src/agent/tools/search-tools.ts

@@ -0,0 +1,496 @@
+import { Type } from '@sinclair/typebox';
+import type { ToolDefinition } from '@mariozechner/pi-coding-agent';
+
+const DEFAULT_TIMEOUT_MS = 15_000;
+const MAX_RESULTS = 10;
+const MAX_RESPONSE_BYTES = 256 * 1024; // 256 KB
+
+// ─── Provider helpers ────────────────────────────────────────────────────────
+
+interface SearchResult {
+  title: string;
+  url: string;
+  snippet: string;
+}
+
+interface SearchResponse {
+  provider: string;
+  query: string;
+  results: SearchResult[];
+  error?: string;
+}
+
+async function fetchWithTimeout(
+  url: string,
+  init: RequestInit,
+  timeoutMs: number,
+): Promise<Response> {
+  const controller = new AbortController();
+  const timer = setTimeout(() => controller.abort(), timeoutMs);
+  try {
+    return await fetch(url, { ...init, signal: controller.signal });
+  } finally {
+    clearTimeout(timer);
+  }
+}
+
+async function readLimited(response: Response): Promise<string> {
+  const reader = response.body?.getReader();
+  if (!reader) return '';
+  const chunks: Uint8Array[] = [];
+  let total = 0;
+  while (true) {
+    const { done, value } = await reader.read();
+    if (done) break;
+    total += value.length;
+    if (total > MAX_RESPONSE_BYTES) {
+      chunks.push(value.subarray(0, MAX_RESPONSE_BYTES - (total - value.length)));
+      reader.cancel();
+      break;
+    }
+    chunks.push(value);
+  }
+  const combined = new Uint8Array(chunks.reduce((a, c) => a + c.length, 0));
+  let offset = 0;
+  for (const chunk of chunks) {
+    combined.set(chunk, offset);
+    offset += chunk.length;
+  }
+  return new TextDecoder().decode(combined);
+}
+
+// ─── Brave Search ────────────────────────────────────────────────────────────
+
+async function searchBrave(query: string, limit: number): Promise<SearchResponse> {
+  const apiKey = process.env['BRAVE_API_KEY'];
+  if (!apiKey) return { provider: 'brave', query, results: [], error: 'BRAVE_API_KEY not set' };
+
+  try {
+    const params = new URLSearchParams({
+      q: query,
+      count: String(Math.min(limit, 20)),
+    });
+    const res = await fetchWithTimeout(
+      `https://api.search.brave.com/res/v1/web/search?${params}`,
+      { headers: { 'X-Subscription-Token': apiKey, Accept: 'application/json' } },
+      DEFAULT_TIMEOUT_MS,
+    );
+    if (!res.ok) {
+      const body = await res.text().catch(() => '');
+      return { provider: 'brave', query, results: [], error: `HTTP ${res.status}: ${body}` };
+    }
+    const data = (await res.json()) as {
+      web?: { results?: Array<{ title: string; url: string; description: string }> };
+    };
+    const results: SearchResult[] = (data.web?.results ?? []).slice(0, limit).map((r) => ({
+      title: r.title,
+      url: r.url,
+      snippet: r.description,
+    }));
+    return { provider: 'brave', query, results };
+  } catch (err) {
+    return {
+      provider: 'brave',
+      query,
+      results: [],
+      error: err instanceof Error ? err.message : String(err),
+    };
+  }
+}
+
+// ─── Tavily Search ───────────────────────────────────────────────────────────
+
+async function searchTavily(query: string, limit: number): Promise<SearchResponse> {
+  const apiKey = process.env['TAVILY_API_KEY'];
+  if (!apiKey) return { provider: 'tavily', query, results: [], error: 'TAVILY_API_KEY not set' };
+
+  try {
+    const res = await fetchWithTimeout(
+      'https://api.tavily.com/search',
+      {
+        method: 'POST',
+        headers: { 'Content-Type': 'application/json' },
+        body: JSON.stringify({
+          api_key: apiKey,
+          query,
+          max_results: Math.min(limit, 10),
+          include_answer: false,
+        }),
+      },
+      DEFAULT_TIMEOUT_MS,
+    );
+    if (!res.ok) {
+      const body = await res.text().catch(() => '');
+      return { provider: 'tavily', query, results: [], error: `HTTP ${res.status}: ${body}` };
+    }
+    const data = (await res.json()) as {
+      results?: Array<{ title: string; url: string; content: string }>;
+    };
+    const results: SearchResult[] = (data.results ?? []).slice(0, limit).map((r) => ({
+      title: r.title,
+      url: r.url,
+      snippet: r.content,
+    }));
+    return { provider: 'tavily', query, results };
+  } catch (err) {
+    return {
+      provider: 'tavily',
+      query,
+      results: [],
+      error: err instanceof Error ? err.message : String(err),
+    };
+  }
+}
+
+// ─── SearXNG (self-hosted) ───────────────────────────────────────────────────
+
+async function searchSearxng(query: string, limit: number): Promise<SearchResponse> {
+  const baseUrl = process.env['SEARXNG_URL'];
+  if (!baseUrl) return { provider: 'searxng', query, results: [], error: 'SEARXNG_URL not set' };
+
+  try {
+    const params = new URLSearchParams({
+      q: query,
+      format: 'json',
+      pageno: '1',
+    });
+    const res = await fetchWithTimeout(
+      `${baseUrl.replace(/\/$/, '')}/search?${params}`,
+      { headers: { Accept: 'application/json' } },
+      DEFAULT_TIMEOUT_MS,
+    );
+    if (!res.ok) {
+      const body = await res.text().catch(() => '');
+      return { provider: 'searxng', query, results: [], error: `HTTP ${res.status}: ${body}` };
+    }
+    const data = (await res.json()) as {
+      results?: Array<{ title: string; url: string; content: string }>;
+    };
+    const results: SearchResult[] = (data.results ?? []).slice(0, limit).map((r) => ({
+      title: r.title,
+      url: r.url,
+      snippet: r.content,
+    }));
+    return { provider: 'searxng', query, results };
+  } catch (err) {
+    return {
+      provider: 'searxng',
+      query,
+      results: [],
+      error: err instanceof Error ? err.message : String(err),
+    };
+  }
+}
+
+// ─── DuckDuckGo (lite HTML endpoint) ─────────────────────────────────────────
+
+async function searchDuckDuckGo(query: string, limit: number): Promise<SearchResponse> {
+  try {
+    // Use the DuckDuckGo Instant Answer API (JSON, free, no key)
+    const params = new URLSearchParams({
+      q: query,
+      format: 'json',
+      no_html: '1',
+      skip_disambig: '1',
+    });
+    const res = await fetchWithTimeout(
+      `https://api.duckduckgo.com/?${params}`,
+      { headers: { Accept: 'application/json' } },
+      DEFAULT_TIMEOUT_MS,
+    );
+    if (!res.ok) {
+      return {
+        provider: 'duckduckgo',
+        query,
+        results: [],
+        error: `HTTP ${res.status}`,
+      };
+    }
+    const text = await readLimited(res);
+    const data = JSON.parse(text) as {
+      AbstractText?: string;
+      AbstractURL?: string;
+      AbstractSource?: string;
+      RelatedTopics?: Array<{
+        Text?: string;
+        FirstURL?: string;
+        Result?: string;
+        Topics?: Array<{ Text?: string; FirstURL?: string }>;
+      }>;
+    };
+
+    const results: SearchResult[] = [];
+
+    // Main abstract result
+    if (data.AbstractText && data.AbstractURL) {
+      results.push({
+        title: data.AbstractSource ?? 'DuckDuckGo Abstract',
+        url: data.AbstractURL,
+        snippet: data.AbstractText,
+      });
+    }
+
+    // Related topics
+    for (const topic of data.RelatedTopics ?? []) {
+      if (results.length >= limit) break;
+      if (topic.Text && topic.FirstURL) {
+        results.push({
+          title: topic.Text.slice(0, 120),
+          url: topic.FirstURL,
+          snippet: topic.Text,
+        });
+      }
+      // Sub-topics
+      for (const sub of topic.Topics ?? []) {
+        if (results.length >= limit) break;
+        if (sub.Text && sub.FirstURL) {
+          results.push({
+            title: sub.Text.slice(0, 120),
+            url: sub.FirstURL,
+            snippet: sub.Text,
+          });
+        }
+      }
+    }
+
+    return { provider: 'duckduckgo', query, results: results.slice(0, limit) };
+  } catch (err) {
+    return {
+      provider: 'duckduckgo',
+      query,
+      results: [],
+      error: err instanceof Error ? err.message : String(err),
+    };
+  }
+}
+
+// ─── Provider resolution ─────────────────────────────────────────────────────
+
+type SearchProvider = 'brave' | 'tavily' | 'searxng' | 'duckduckgo' | 'auto';
+
+function getAvailableProviders(): SearchProvider[] {
+  const available: SearchProvider[] = [];
+  if (process.env['BRAVE_API_KEY']) available.push('brave');
+  if (process.env['TAVILY_API_KEY']) available.push('tavily');
+  if (process.env['SEARXNG_URL']) available.push('searxng');
+  // DuckDuckGo is always available (no API key needed)
+  available.push('duckduckgo');
+  return available;
+}
+
+async function executeSearch(
+  provider: SearchProvider,
+  query: string,
+  limit: number,
+): Promise<SearchResponse> {
+  switch (provider) {
+    case 'brave':
+      return searchBrave(query, limit);
+    case 'tavily':
+      return searchTavily(query, limit);
+    case 'searxng':
+      return searchSearxng(query, limit);
+    case 'duckduckgo':
+      return searchDuckDuckGo(query, limit);
+    case 'auto': {
+      // Try providers in priority order: Brave > Tavily > SearXNG > DuckDuckGo
+      const available = getAvailableProviders();
+      for (const p of available) {
+        const result = await executeSearch(p, query, limit);
+        if (!result.error && result.results.length > 0) return result;
+      }
+      // Fall back to DuckDuckGo if everything failed
+      return searchDuckDuckGo(query, limit);
+    }
+  }
+}
+
+function formatSearchResults(response: SearchResponse): string {
+  const lines: string[] = [];
+  lines.push(`Search provider: ${response.provider}`);
+  lines.push(`Query: "${response.query}"`);
+
+  if (response.error) {
+    lines.push(`Error: ${response.error}`);
+  }
+
+  if (response.results.length === 0) {
+    lines.push('No results found.');
+  } else {
+    lines.push(`Results (${response.results.length}):\n`);
+    for (let i = 0; i < response.results.length; i++) {
+      const r = response.results[i]!;
+      lines.push(`${i + 1}. ${r.title}`);
+      lines.push(`   URL: ${r.url}`);
+      lines.push(`   ${r.snippet}`);
+      lines.push('');
+    }
+  }
+  return lines.join('\n');
+}
+
+// ─── Tool exports ────────────────────────────────────────────────────────────
+
+export function createSearchTools(): ToolDefinition[] {
+  const webSearch: ToolDefinition = {
+    name: 'web_search',
+    label: 'Web Search',
+    description:
+      'Search the web using configured search providers. ' +
+      'Supports Brave, Tavily, SearXNG, and DuckDuckGo. ' +
+      'Use "auto" provider to pick the best available. ' +
+      'DuckDuckGo is always available as a fallback (no API key needed).',
+    parameters: Type.Object({
+      query: Type.String({ description: 'Search query' }),
+      provider: Type.Optional(
+        Type.String({
+          description:
+            'Search provider: "auto" (default), "brave", "tavily", "searxng", or "duckduckgo"',
+        }),
+      ),
+      limit: Type.Optional(
+        Type.Number({ description: `Max results to return (default 5, max ${MAX_RESULTS})` }),
+      ),
+    }),
+    async execute(_toolCallId, params) {
+      const { query, provider, limit } = params as {
+        query: string;
+        provider?: string;
+        limit?: number;
+      };
+
+      const effectiveProvider = (provider ?? 'auto') as SearchProvider;
+      const validProviders = ['auto', 'brave', 'tavily', 'searxng', 'duckduckgo'];
+      if (!validProviders.includes(effectiveProvider)) {
+        return {
+          content: [
+            {
+              type: 'text' as const,
+              text: `Invalid provider "${provider}". Valid: ${validProviders.join(', ')}`,
+            },
+          ],
+          details: undefined,
+        };
+      }
+
+      const effectiveLimit = Math.min(Math.max(limit ?? 5, 1), MAX_RESULTS);
+
+      try {
+        const response = await executeSearch(effectiveProvider, query, effectiveLimit);
+        return {
+          content: [{ type: 'text' as const, text: formatSearchResults(response) }],
+          details: undefined,
+        };
+      } catch (err) {
+        return {
+          content: [
+            {
+              type: 'text' as const,
+              text: `Search failed: ${err instanceof Error ? err.message : String(err)}`,
+            },
+          ],
+          details: undefined,
+        };
+      }
+    },
+  };
+
+  const webSearchNews: ToolDefinition = {
+    name: 'web_search_news',
+    label: 'Web Search (News)',
+    description:
+      'Search for recent news articles. Uses Brave News API if available, falls back to standard search with news keywords.',
+    parameters: Type.Object({
+      query: Type.String({ description: 'News search query' }),
+      limit: Type.Optional(
+        Type.Number({ description: `Max results (default 5, max ${MAX_RESULTS})` }),
+      ),
+    }),
+    async execute(_toolCallId, params) {
+      const { query, limit } = params as { query: string; limit?: number };
+      const effectiveLimit = Math.min(Math.max(limit ?? 5, 1), MAX_RESULTS);
+
+      // Try Brave News API first (dedicated news endpoint)
+      const braveKey = process.env['BRAVE_API_KEY'];
+      if (braveKey) {
+        try {
+          const newsParams = new URLSearchParams({
+            q: query,
+            count: String(effectiveLimit),
+          });
+          const res = await fetchWithTimeout(
+            `https://api.search.brave.com/res/v1/news/search?${newsParams}`,
+            {
+              headers: {
+                'X-Subscription-Token': braveKey,
+                Accept: 'application/json',
+              },
+            },
+            DEFAULT_TIMEOUT_MS,
+          );
+          if (res.ok) {
+            const data = (await res.json()) as {
+              results?: Array<{
+                title: string;
+                url: string;
+                description: string;
+                age?: string;
+              }>;
+            };
+            const results: SearchResult[] = (data.results ?? [])
+              .slice(0, effectiveLimit)
+              .map((r) => ({
+                title: r.title + (r.age ? ` (${r.age})` : ''),
+                url: r.url,
+                snippet: r.description,
+              }));
+            const response: SearchResponse = { provider: 'brave-news', query, results };
+            return {
+              content: [{ type: 'text' as const, text: formatSearchResults(response) }],
+              details: undefined,
+            };
+          }
+        } catch {
+          // Fall through to generic search
+        }
+      }
+
+      // Fallback: standard search with "news" appended
+      const newsQuery = `${query} news latest`;
+      const response = await executeSearch('auto', newsQuery, effectiveLimit);
+      return {
+        content: [{ type: 'text' as const, text: formatSearchResults(response) }],
+        details: undefined,
+      };
+    },
+  };
+
+  const searchProviders: ToolDefinition = {
+    name: 'web_search_providers',
+    label: 'List Search Providers',
+    description: 'List the currently available and configured web search providers.',
+    parameters: Type.Object({}),
+    async execute() {
+      const available = getAvailableProviders();
+      const allProviders = [
+        { name: 'brave', configured: !!process.env['BRAVE_API_KEY'], envVar: 'BRAVE_API_KEY' },
+        { name: 'tavily', configured: !!process.env['TAVILY_API_KEY'], envVar: 'TAVILY_API_KEY' },
+        { name: 'searxng', configured: !!process.env['SEARXNG_URL'], envVar: 'SEARXNG_URL' },
+        { name: 'duckduckgo', configured: true, envVar: '(none — always available)' },
+      ];
+
+      const lines = ['Search providers:\n'];
+      for (const p of allProviders) {
+        const status = p.configured ? '✓ configured' : '✗ not configured';
+        lines.push(`  ${p.name}: ${status} (${p.envVar})`);
+      }
+      lines.push(`\nActive providers for "auto" mode: ${available.join(', ')}`);
+      return {
+        content: [{ type: 'text' as const, text: lines.join('\n') }],
+        details: undefined,
+      };
+    },
+  };
+
+  return [webSearch, webSearchNews, searchProviders];
+}

apps/gateway/src/chat/chat.gateway.ts

@@ -18,6 +18,7 @@ import type {
   SlashCommandPayload,
   SystemReloadPayload,
   RoutingDecisionInfo,
+  AbortPayload,
 } from '@mosaic/types';
 import { AgentService, type ConversationHistoryMessage } from '../agent/agent.service.js';
 import { AUTH } from '../auth/auth.tokens.js';
@@ -325,6 +326,38 @@ export class ChatGateway implements OnGatewayInit, OnGatewayConnection, OnGatewa
     });
   }
 
+  @SubscribeMessage('abort')
+  async handleAbort(
+    @ConnectedSocket() client: Socket,
+    @MessageBody() data: AbortPayload,
+  ): Promise<void> {
+    const conversationId = data.conversationId;
+    this.logger.log(`Abort requested by ${client.id} for conversation ${conversationId}`);
+
+    const session = this.agentService.getSession(conversationId);
+    if (!session) {
+      client.emit('error', {
+        conversationId,
+        error: 'No active session to abort.',
+      });
+      return;
+    }
+
+    try {
+      await session.piSession.abort();
+      this.logger.log(`Agent session ${conversationId} aborted successfully`);
+    } catch (err) {
+      this.logger.error(
+        `Failed to abort session ${conversationId}`,
+        err instanceof Error ? err.stack : String(err),
+      );
+      client.emit('error', {
+        conversationId,
+        error: 'Failed to abort the agent operation.',
+      });
+    }
+  }
+
   @SubscribeMessage('command:execute')
   async handleCommandExecute(
     @ConnectedSocket() client: Socket,

apps/gateway/src/commands/command-executor-p8012.spec.ts

@@ -82,6 +82,7 @@ function buildService(): CommandExecutorService {
     mockBrain as never,
     null,
     mockChatGateway as never,
+    null,
   );
 }
 

apps/gateway/src/commands/command-executor.service.ts

@@ -7,6 +7,7 @@ import { ChatGateway } from '../chat/chat.gateway.js';
 import { SessionGCService } from '../gc/session-gc.service.js';
 import { SystemOverrideService } from '../preferences/system-override.service.js';
 import { ReloadService } from '../reload/reload.service.js';
+import { McpClientService } from '../mcp-client/mcp-client.service.js';
 import { BRAIN } from '../brain/brain.tokens.js';
 import { COMMANDS_REDIS } from './commands.tokens.js';
 import { CommandRegistryService } from './command-registry.service.js';
@@ -28,6 +29,9 @@ export class CommandExecutorService {
     @Optional()
     @Inject(forwardRef(() => ChatGateway))
     private readonly chatGateway: ChatGateway | null,
+    @Optional()
+    @Inject(McpClientService)
+    private readonly mcpClient: McpClientService | null,
   ) {}
 
   async execute(payload: SlashCommandPayload, userId: string): Promise<SlashCommandResultPayload> {
@@ -105,6 +109,8 @@ export class CommandExecutorService {
           };
         case 'tools':
           return await this.handleTools(conversationId, userId);
+        case 'mcp':
+          return await this.handleMcp(args ?? null, conversationId);
         case 'reload': {
           if (!this.reloadService) {
             return {
@@ -489,4 +495,92 @@ export class CommandExecutorService {
       conversationId,
     };
   }
+
+  private async handleMcp(
+    args: string | null,
+    conversationId: string,
+  ): Promise<SlashCommandResultPayload> {
+    if (!this.mcpClient) {
+      return {
+        command: 'mcp',
+        conversationId,
+        success: false,
+        message: 'MCP client service is not available.',
+      };
+    }
+
+    const action = args?.trim().split(/\s+/)[0] ?? 'status';
+
+    switch (action) {
+      case 'status':
+      case 'servers': {
+        const statuses = this.mcpClient.getServerStatuses();
+        if (statuses.length === 0) {
+          return {
+            command: 'mcp',
+            conversationId,
+            success: true,
+            message:
+              'No MCP servers configured. Set MCP_SERVERS env var to connect external tool servers.',
+          };
+        }
+        const lines = ['MCP Server Status:\n'];
+        for (const s of statuses) {
+          const status = s.connected ? '✓ connected' : '✗ disconnected';
+          lines.push(`  ${s.name}: ${status}`);
+          lines.push(`    URL: ${s.url}`);
+          lines.push(`    Tools: ${s.toolCount}`);
+          if (s.error) lines.push(`    Error: ${s.error}`);
+          lines.push('');
+        }
+        const tools = this.mcpClient.getToolDefinitions();
+        if (tools.length > 0) {
+          lines.push(`Total bridged tools: ${tools.length}`);
+          lines.push(`Tool names: ${tools.map((t) => t.name).join(', ')}`);
+        }
+        return {
+          command: 'mcp',
+          conversationId,
+          success: true,
+          message: lines.join('\n'),
+        };
+      }
+
+      case 'reconnect': {
+        const serverName = args?.trim().split(/\s+/).slice(1).join(' ');
+        if (!serverName) {
+          return {
+            command: 'mcp',
+            conversationId,
+            success: false,
+            message: 'Usage: /mcp reconnect <server-name>',
+          };
+        }
+        try {
+          await this.mcpClient.reconnectServer(serverName);
+          return {
+            command: 'mcp',
+            conversationId,
+            success: true,
+            message: `MCP server "${serverName}" reconnected successfully.`,
+          };
+        } catch (err) {
+          return {
+            command: 'mcp',
+            conversationId,
+            success: false,
+            message: `Failed to reconnect MCP server "${serverName}": ${err instanceof Error ? err.message : String(err)}`,
+          };
+        }
+      }
+
+      default:
+        return {
+          command: 'mcp',
+          conversationId,
+          success: false,
+          message: `Unknown MCP action: "${action}". Use: /mcp status, /mcp servers, /mcp reconnect <name>`,
+        };
+    }
+  }
 }

apps/gateway/src/commands/command-registry.service.ts

@@ -260,6 +260,23 @@ export class CommandRegistryService implements OnModuleInit {
         execution: 'socket',
         available: true,
       },
+      {
+        name: 'mcp',
+        description: 'Manage MCP server connections (status/reconnect/servers)',
+        aliases: [],
+        args: [
+          {
+            name: 'action',
+            type: 'enum',
+            optional: true,
+            values: ['status', 'reconnect', 'servers'],
+            description: 'Action: status (default), reconnect <name>, servers',
+          },
+        ],
+        scope: 'agent',
+        execution: 'socket',
+        available: true,
+      },
       {
         name: 'reload',
         description: 'Soft-reload gateway plugins and command manifest (admin)',

apps/gateway/src/commands/commands.integration.spec.ts

@@ -65,6 +65,7 @@ function buildExecutor(registry: CommandRegistryService): CommandExecutorService
     mockBrain as never,
     null, // reloadService (optional)
     null, // chatGateway (optional)
+    null, // mcpClient (optional)
   );
 }
 

apps/web/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/web",
-  "version": "0.0.0",
+  "version": "0.0.2",
   "private": true,
   "scripts": {
     "build": "next build",

packages/agent/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/agent",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
   "exports": {

packages/auth/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/auth",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "type": "module",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",

packages/brain/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/brain",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
   "exports": {

packages/cli/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/cli",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.4",
   "type": "module",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
@@ -14,7 +14,7 @@
     }
   },
   "scripts": {
-    "build": "tsc",
+    "build": "tsc -p tsconfig.build.json",
     "dev": "tsx src/cli.ts",
     "lint": "eslint src",
     "typecheck": "tsc --noEmit",

packages/cli/src/cli.ts

@@ -5,7 +5,8 @@ import { Command } from 'commander';
 import { createQualityRailsCli } from '@mosaic/quality-rails';
 import { registerAgentCommand } from './commands/agent.js';
 import { registerMissionCommand } from './commands/mission.js';
-import { registerPrdyCommand } from './commands/prdy.js';
+// prdy is registered via launch.ts
+import { registerLaunchCommands } from './commands/launch.js';
 
 const _require = createRequire(import.meta.url);
 const CLI_VERSION: string = (_require('../package.json') as { version: string }).version;
@@ -22,6 +23,10 @@ const program = new Command();
 
 program.name('mosaic').description('Mosaic Stack CLI').version(CLI_VERSION);
 
+// ─── runtime launchers + framework commands ────────────────────────────
+
+registerLaunchCommands(program);
+
 // ─── login ──────────────────────────────────────────────────────────────
 
 program
@@ -293,10 +298,6 @@ registerAgentCommand(program);
 
 registerMissionCommand(program);
 
-// ─── prdy ──────────────────────────────────────────────────────────────
-
-registerPrdyCommand(program);
-
 // ─── quality-rails ──────────────────────────────────────────────────────
 
 const qrWrapper = createQualityRailsCli();

packages/cli/src/commands/launch.ts

@@ -0,0 +1,754 @@
+/**
+ * Native runtime launcher — replaces the bash mosaic-launch script.
+ *
+ * Builds a composed runtime prompt from AGENTS.md + RUNTIME.md + USER.md +
+ * TOOLS.md + mission context + PRD status, then exec's into the target CLI.
+ */
+
+import { execFileSync, execSync, spawnSync } from 'node:child_process';
+import { existsSync, mkdirSync, readFileSync, writeFileSync, readdirSync, rmSync } from 'node:fs';
+import { homedir } from 'node:os';
+import { join, dirname } from 'node:path';
+import type { Command } from 'commander';
+
+const MOSAIC_HOME = process.env['MOSAIC_HOME'] ?? join(homedir(), '.config', 'mosaic');
+
+type RuntimeName = 'claude' | 'codex' | 'opencode' | 'pi';
+
+const RUNTIME_LABELS: Record<RuntimeName, string> = {
+  claude: 'Claude Code',
+  codex: 'Codex',
+  opencode: 'OpenCode',
+  pi: 'Pi',
+};
+
+// ─── Pre-flight checks ──────────────────────────────────────────────────────
+
+function checkMosaicHome(): void {
+  if (!existsSync(MOSAIC_HOME)) {
+    console.error(`[mosaic] ERROR: ${MOSAIC_HOME} not found.`);
+    console.error(
+      '[mosaic] Install: bash <(curl -fsSL https://git.mosaicstack.dev/mosaic/mosaic-stack/raw/branch/main/tools/install.sh)',
+    );
+    process.exit(1);
+  }
+}
+
+function checkFile(path: string, label: string): void {
+  if (!existsSync(path)) {
+    console.error(`[mosaic] ERROR: ${label} not found: ${path}`);
+    process.exit(1);
+  }
+}
+
+function checkRuntime(cmd: string): void {
+  try {
+    execSync(`which ${cmd}`, { stdio: 'ignore' });
+  } catch {
+    console.error(`[mosaic] ERROR: '${cmd}' not found in PATH.`);
+    console.error(`[mosaic] Install ${cmd} before launching.`);
+    process.exit(1);
+  }
+}
+
+function checkSoul(): void {
+  const soulPath = join(MOSAIC_HOME, 'SOUL.md');
+  if (!existsSync(soulPath)) {
+    console.log('[mosaic] SOUL.md not found. Running setup wizard...');
+
+    // Prefer the TypeScript wizard (idempotent, detects existing files)
+    try {
+      const result = spawnSync(process.execPath, [process.argv[1]!, 'wizard'], {
+        stdio: 'inherit',
+      });
+      if (result.status === 0 && existsSync(soulPath)) return;
+    } catch {
+      // Fall through to legacy init
+    }
+
+    // Fallback: legacy bash mosaic-init
+    const initBin = join(MOSAIC_HOME, 'tools', '_scripts', 'mosaic-init');
+    if (existsSync(initBin)) {
+      spawnSync(initBin, [], { stdio: 'inherit' });
+    } else {
+      console.error('[mosaic] Setup failed. Run: mosaic wizard');
+      process.exit(1);
+    }
+  }
+}
+
+function checkSequentialThinking(runtime: string): void {
+  const checker = join(MOSAIC_HOME, 'tools', '_scripts', 'mosaic-ensure-sequential-thinking');
+  if (!existsSync(checker)) return; // Skip if checker doesn't exist
+  const result = spawnSync(checker, ['--check', '--runtime', runtime], { stdio: 'ignore' });
+  if (result.status !== 0) {
+    console.error('[mosaic] ERROR: sequential-thinking MCP is required but not configured.');
+    console.error(`[mosaic] Fix: ${checker} --runtime ${runtime}`);
+    process.exit(1);
+  }
+}
+
+// ─── File helpers ────────────────────────────────────────────────────────────
+
+function readOptional(path: string): string {
+  try {
+    return readFileSync(path, 'utf-8');
+  } catch {
+    return '';
+  }
+}
+
+function readJson(path: string): Record<string, unknown> | null {
+  try {
+    return JSON.parse(readFileSync(path, 'utf-8')) as Record<string, unknown>;
+  } catch {
+    return null;
+  }
+}
+
+// ─── Mission context ─────────────────────────────────────────────────────────
+
+interface MissionInfo {
+  name: string;
+  id: string;
+  status: string;
+  milestoneCount: number;
+  completedCount: number;
+}
+
+function detectMission(): MissionInfo | null {
+  const missionFile = '.mosaic/orchestrator/mission.json';
+  const data = readJson(missionFile);
+  if (!data) return null;
+
+  const status = String(data['status'] ?? 'inactive');
+  if (status !== 'active' && status !== 'paused') return null;
+
+  const milestones = Array.isArray(data['milestones']) ? data['milestones'] : [];
+  const completed = milestones.filter(
+    (m) =>
+      typeof m === 'object' &&
+      m !== null &&
+      (m as Record<string, unknown>)['status'] === 'completed',
+  );
+
+  return {
+    name: String(data['name'] ?? 'unnamed'),
+    id: String(data['mission_id'] ?? ''),
+    status,
+    milestoneCount: milestones.length,
+    completedCount: completed.length,
+  };
+}
+
+function buildMissionBlock(mission: MissionInfo): string {
+  return `# ACTIVE MISSION — HARD GATE (Read Before Anything Else)
+
+An active orchestration mission exists in this project. This is a BLOCKING requirement.
+
+**Mission:** ${mission.name}
+**ID:** ${mission.id}
+**Status:** ${mission.status}
+**Milestones:** ${mission.completedCount} / ${mission.milestoneCount} completed
+
+## MANDATORY — Before ANY Response to the User
+
+You MUST complete these steps before responding to any user message, including simple greetings:
+
+1. Read \`~/.config/mosaic/guides/ORCHESTRATOR-PROTOCOL.md\` (mission lifecycle protocol)
+2. Read \`docs/MISSION-MANIFEST.md\` for full mission scope, milestones, and success criteria
+3. Read the latest scratchpad in \`docs/scratchpads/\` for session history, decisions, and corrections
+4. Read \`docs/TASKS.md\` for current task state (what is done, what is next)
+5. After reading all four, acknowledge the mission state to the user before proceeding
+
+If the user gives a task, execute it within the mission context. If no task is given, present mission status and ask how to proceed.
+
+`;
+}
+
+// ─── PRD status ──────────────────────────────────────────────────────────────
+
+function buildPrdBlock(): string {
+  const prdFile = 'docs/PRD.md';
+  if (!existsSync(prdFile)) return '';
+
+  const content = readFileSync(prdFile, 'utf-8');
+  const patterns = [
+    /^#{2,3} .*(problem statement|objective)/im,
+    /^#{2,3} .*(scope|non.goal|out of scope|in.scope)/im,
+    /^#{2,3} .*(user stor|stakeholder|user.*requirement)/im,
+    /^#{2,3} .*functional requirement/im,
+    /^#{2,3} .*non.functional/im,
+    /^#{2,3} .*acceptance criteria/im,
+    /^#{2,3} .*(technical consideration|constraint|dependenc)/im,
+    /^#{2,3} .*(risk|open question)/im,
+    /^#{2,3} .*(success metric|test|verification)/im,
+    /^#{2,3} .*(milestone|delivery|scope version)/im,
+  ];
+
+  let sections = 0;
+  for (const pattern of patterns) {
+    if (pattern.test(content)) sections++;
+  }
+
+  const assumptions = (content.match(/ASSUMPTION:/g) ?? []).length;
+  const status = sections < 10 ? `incomplete (${sections}/10 sections)` : 'ready';
+
+  return `
+# PRD Status
+
+- **File:** docs/PRD.md
+- **Status:** ${status}
+- **Assumptions:** ${assumptions}
+
+`;
+}
+
+// ─── Runtime prompt builder ──────────────────────────────────────────────────
+
+function buildRuntimePrompt(runtime: RuntimeName): string {
+  const runtimeContractPaths: Record<RuntimeName, string> = {
+    claude: join(MOSAIC_HOME, 'runtime', 'claude', 'RUNTIME.md'),
+    codex: join(MOSAIC_HOME, 'runtime', 'codex', 'RUNTIME.md'),
+    opencode: join(MOSAIC_HOME, 'runtime', 'opencode', 'RUNTIME.md'),
+    pi: join(MOSAIC_HOME, 'runtime', 'pi', 'RUNTIME.md'),
+  };
+
+  const runtimeFile = runtimeContractPaths[runtime];
+  checkFile(runtimeFile, `Runtime contract for ${runtime}`);
+
+  const parts: string[] = [];
+
+  // Mission context (injected first)
+  const mission = detectMission();
+  if (mission) {
+    parts.push(buildMissionBlock(mission));
+  }
+
+  // PRD status
+  const prdBlock = buildPrdBlock();
+  if (prdBlock) parts.push(prdBlock);
+
+  // Hard gate
+  parts.push(`# Mosaic Launcher Runtime Contract (Hard Gate)
+
+This contract is injected by \`mosaic\` launch and is mandatory.
+
+First assistant response MUST start with exactly one mode declaration line:
+1. Orchestration mission: \`Now initiating Orchestrator mode...\`
+2. Implementation mission: \`Now initiating Delivery mode...\`
+3. Review-only mission: \`Now initiating Review mode...\`
+
+No tool call or implementation step may occur before that first line.
+
+Mosaic hard gates OVERRIDE runtime-default caution for routine delivery operations.
+For required push/merge/issue-close/release actions, execute without routine confirmation prompts.
+`);
+
+  // AGENTS.md
+  parts.push(readFileSync(join(MOSAIC_HOME, 'AGENTS.md'), 'utf-8'));
+
+  // USER.md
+  const user = readOptional(join(MOSAIC_HOME, 'USER.md'));
+  if (user) parts.push('\n\n# User Profile\n\n' + user);
+
+  // TOOLS.md
+  const tools = readOptional(join(MOSAIC_HOME, 'TOOLS.md'));
+  if (tools) parts.push('\n\n# Machine Tools\n\n' + tools);
+
+  // Runtime-specific contract
+  parts.push('\n\n# Runtime-Specific Contract\n\n' + readFileSync(runtimeFile, 'utf-8'));
+
+  return parts.join('\n');
+}
+
+// ─── Session lock ────────────────────────────────────────────────────────────
+
+function writeSessionLock(runtime: string): void {
+  const missionFile = '.mosaic/orchestrator/mission.json';
+  const lockFile = '.mosaic/orchestrator/session.lock';
+  const data = readJson(missionFile);
+  if (!data) return;
+
+  const status = String(data['status'] ?? 'inactive');
+  if (status !== 'active' && status !== 'paused') return;
+
+  const sessionId = `${runtime}-${new Date().toISOString().replace(/[:.]/g, '-')}-${process.pid}`;
+  const lock = {
+    session_id: sessionId,
+    runtime,
+    pid: process.pid,
+    started_at: new Date().toISOString(),
+    project_path: process.cwd(),
+    milestone_id: '',
+  };
+
+  try {
+    mkdirSync(dirname(lockFile), { recursive: true });
+    writeFileSync(lockFile, JSON.stringify(lock, null, 2) + '\n');
+
+    // Clean up on exit
+    const cleanup = () => {
+      try {
+        rmSync(lockFile, { force: true });
+      } catch {
+        // best-effort
+      }
+    };
+    process.on('exit', cleanup);
+    process.on('SIGINT', () => {
+      cleanup();
+      process.exit(130);
+    });
+    process.on('SIGTERM', () => {
+      cleanup();
+      process.exit(143);
+    });
+  } catch {
+    // Non-fatal
+  }
+}
+
+// ─── Resumable session advisory ──────────────────────────────────────────────
+
+function checkResumableSession(): void {
+  const lockFile = '.mosaic/orchestrator/session.lock';
+  const missionFile = '.mosaic/orchestrator/mission.json';
+
+  if (existsSync(lockFile)) {
+    const lock = readJson(lockFile);
+    if (lock) {
+      const pid = Number(lock['pid'] ?? 0);
+      if (pid > 0) {
+        try {
+          process.kill(pid, 0); // Check if alive
+        } catch {
+          // Process is dead — stale lock
+          rmSync(lockFile, { force: true });
+          console.log(`[mosaic] Cleaned up stale session lock (PID ${pid} no longer running).\n`);
+        }
+      }
+    }
+  } else if (existsSync(missionFile)) {
+    const data = readJson(missionFile);
+    if (data && data['status'] === 'active') {
+      console.log('[mosaic] Active mission detected. Generate continuation prompt with:');
+      console.log('[mosaic]   mosaic coord continue\n');
+    }
+  }
+}
+
+// ─── Write config for runtimes that read from fixed paths ────────────────────
+
+function ensureRuntimeConfig(runtime: RuntimeName, destPath: string): void {
+  const prompt = buildRuntimePrompt(runtime);
+  mkdirSync(dirname(destPath), { recursive: true });
+  const existing = readOptional(destPath);
+  if (existing !== prompt) {
+    writeFileSync(destPath, prompt);
+  }
+}
+
+// ─── Pi skill/extension discovery ────────────────────────────────────────────
+
+function discoverPiSkills(): string[] {
+  const args: string[] = [];
+  for (const skillsRoot of [join(MOSAIC_HOME, 'skills'), join(MOSAIC_HOME, 'skills-local')]) {
+    if (!existsSync(skillsRoot)) continue;
+    try {
+      for (const entry of readdirSync(skillsRoot, { withFileTypes: true })) {
+        if (!entry.isDirectory()) continue;
+        const skillDir = join(skillsRoot, entry.name);
+        if (existsSync(join(skillDir, 'SKILL.md'))) {
+          args.push('--skill', skillDir);
+        }
+      }
+    } catch {
+      // skip
+    }
+  }
+  return args;
+}
+
+function discoverPiExtension(): string[] {
+  const ext = join(MOSAIC_HOME, 'runtime', 'pi', 'mosaic-extension.ts');
+  return existsSync(ext) ? ['--extension', ext] : [];
+}
+
+// ─── Launch functions ────────────────────────────────────────────────────────
+
+function getMissionPrompt(): string {
+  const mission = detectMission();
+  if (!mission) return '';
+  return `Active mission detected: ${mission.name}. Read the mission state files and report status.`;
+}
+
+function launchRuntime(runtime: RuntimeName, args: string[], yolo: boolean): never {
+  checkMosaicHome();
+  checkFile(join(MOSAIC_HOME, 'AGENTS.md'), 'AGENTS.md');
+  checkSoul();
+  checkRuntime(runtime);
+
+  // Pi doesn't need sequential-thinking (has native thinking levels)
+  if (runtime !== 'pi') {
+    checkSequentialThinking(runtime);
+  }
+
+  checkResumableSession();
+
+  const missionPrompt = getMissionPrompt();
+  const hasMissionNoArgs = missionPrompt && args.length === 0;
+  const label = RUNTIME_LABELS[runtime];
+  const modeStr = yolo ? ' in YOLO mode' : '';
+  const missionStr = hasMissionNoArgs ? ' (active mission detected)' : '';
+
+  writeSessionLock(runtime);
+
+  switch (runtime) {
+    case 'claude': {
+      const prompt = buildRuntimePrompt('claude');
+      const cliArgs = yolo ? ['--dangerously-skip-permissions'] : [];
+      cliArgs.push('--append-system-prompt', prompt);
+      if (hasMissionNoArgs) {
+        cliArgs.push(missionPrompt);
+      } else {
+        cliArgs.push(...args);
+      }
+      console.log(`[mosaic] Launching ${label}${modeStr}${missionStr}...`);
+      execRuntime('claude', cliArgs);
+      break;
+    }
+
+    case 'codex': {
+      ensureRuntimeConfig('codex', join(homedir(), '.codex', 'instructions.md'));
+      const cliArgs = yolo ? ['--dangerously-bypass-approvals-and-sandbox'] : [];
+      if (hasMissionNoArgs) {
+        cliArgs.push(missionPrompt);
+      } else {
+        cliArgs.push(...args);
+      }
+      console.log(`[mosaic] Launching ${label}${modeStr}${missionStr}...`);
+      execRuntime('codex', cliArgs);
+      break;
+    }
+
+    case 'opencode': {
+      ensureRuntimeConfig('opencode', join(homedir(), '.config', 'opencode', 'AGENTS.md'));
+      console.log(`[mosaic] Launching ${label}${modeStr}...`);
+      execRuntime('opencode', args);
+      break;
+    }
+
+    case 'pi': {
+      const prompt = buildRuntimePrompt('pi');
+      const cliArgs = ['--append-system-prompt', prompt];
+      cliArgs.push(...discoverPiSkills());
+      cliArgs.push(...discoverPiExtension());
+      if (hasMissionNoArgs) {
+        cliArgs.push(missionPrompt);
+      } else {
+        cliArgs.push(...args);
+      }
+      console.log(`[mosaic] Launching ${label}${modeStr}${missionStr}...`);
+      execRuntime('pi', cliArgs);
+      break;
+    }
+  }
+
+  process.exit(0); // Unreachable but satisfies never
+}
+
+/** exec into the runtime, replacing the current process. */
+function execRuntime(cmd: string, args: string[]): void {
+  try {
+    // Use execFileSync with inherited stdio to replace the process
+    const result = spawnSync(cmd, args, {
+      stdio: 'inherit',
+      env: process.env,
+    });
+    process.exit(result.status ?? 0);
+  } catch (err) {
+    console.error(`[mosaic] Failed to launch ${cmd}:`, err instanceof Error ? err.message : err);
+    process.exit(1);
+  }
+}
+
+// ─── Framework script/tool delegation ───────────────────────────────────────
+
+function delegateToScript(scriptPath: string, args: string[], env?: Record<string, string>): never {
+  if (!existsSync(scriptPath)) {
+    console.error(`[mosaic] Script not found: ${scriptPath}`);
+    process.exit(1);
+  }
+  try {
+    execFileSync('bash', [scriptPath, ...args], {
+      stdio: 'inherit',
+      env: { ...process.env, ...env },
+    });
+    process.exit(0);
+  } catch (err) {
+    process.exit((err as { status?: number }).status ?? 1);
+  }
+}
+
+function fwScript(name: string): string {
+  return join(MOSAIC_HOME, 'tools', '_scripts', name);
+}
+
+function toolScript(toolDir: string, name: string): string {
+  return join(MOSAIC_HOME, 'tools', toolDir, name);
+}
+
+// ─── Coord (mission orchestrator) ───────────────────────────────────────────
+
+const COORD_SUBCMDS: Record<string, string> = {
+  status: 'session-status.sh',
+  session: 'session-status.sh',
+  init: 'mission-init.sh',
+  mission: 'mission-status.sh',
+  progress: 'mission-status.sh',
+  continue: 'continue-prompt.sh',
+  next: 'continue-prompt.sh',
+  run: 'session-run.sh',
+  start: 'session-run.sh',
+  smoke: 'smoke-test.sh',
+  test: 'smoke-test.sh',
+  resume: 'session-resume.sh',
+  recover: 'session-resume.sh',
+};
+
+function runCoord(args: string[]): never {
+  checkMosaicHome();
+  let runtime = 'claude';
+  let yoloFlag = '';
+  const coordArgs: string[] = [];
+
+  for (const arg of args) {
+    if (arg === '--claude' || arg === '--codex' || arg === '--pi') {
+      runtime = arg.slice(2);
+    } else if (arg === '--yolo') {
+      yoloFlag = '--yolo';
+    } else {
+      coordArgs.push(arg);
+    }
+  }
+
+  const subcmd = coordArgs[0] ?? 'help';
+  const subArgs = coordArgs.slice(1);
+  const script = COORD_SUBCMDS[subcmd];
+
+  if (!script) {
+    console.log(`mosaic coord — mission coordinator tools
+
+Commands:
+  init --name <name> [opts]   Initialize a new mission
+  mission [--project <path>]  Show mission progress dashboard
+  status [--project <path>]   Check agent session health
+  continue [--project <path>] Generate continuation prompt
+  run [--project <path>]      Launch runtime with mission context
+  smoke                       Run orchestration smoke checks
+  resume [--project <path>]   Crash recovery
+
+Runtime: --claude (default) | --codex | --pi | --yolo`);
+    process.exit(subcmd === 'help' ? 0 : 1);
+  }
+
+  if (yoloFlag) subArgs.unshift(yoloFlag);
+  delegateToScript(toolScript('orchestrator', script), subArgs, {
+    MOSAIC_COORD_RUNTIME: runtime,
+  });
+}
+
+// ─── Prdy (PRD tools via framework scripts) ─────────────────────────────────
+
+const PRDY_SUBCMDS: Record<string, string> = {
+  init: 'prdy-init.sh',
+  update: 'prdy-update.sh',
+  validate: 'prdy-validate.sh',
+  check: 'prdy-validate.sh',
+  status: 'prdy-status.sh',
+};
+
+function runPrdyLocal(args: string[]): never {
+  checkMosaicHome();
+  let runtime = 'claude';
+  const prdyArgs: string[] = [];
+
+  for (const arg of args) {
+    if (arg === '--claude' || arg === '--codex' || arg === '--pi') {
+      runtime = arg.slice(2);
+    } else {
+      prdyArgs.push(arg);
+    }
+  }
+
+  const subcmd = prdyArgs[0] ?? 'help';
+  const subArgs = prdyArgs.slice(1);
+  const script = PRDY_SUBCMDS[subcmd];
+
+  if (!script) {
+    console.log(`mosaic prdy — PRD creation and validation
+
+Commands:
+  init [--project <path>] [--name <feature>]   Create docs/PRD.md
+  update [--project <path>]                    Update existing PRD
+  validate [--project <path>]                  Check PRD completeness
+  status [--project <path>]                    Quick PRD health check
+
+Runtime: --claude (default) | --codex | --pi`);
+    process.exit(subcmd === 'help' ? 0 : 1);
+  }
+
+  delegateToScript(toolScript('prdy', script), subArgs, {
+    MOSAIC_PRDY_RUNTIME: runtime,
+  });
+}
+
+// ─── Seq (sequential-thinking MCP) ──────────────────────────────────────────
+
+function runSeq(args: string[]): never {
+  checkMosaicHome();
+  const action = args[0] ?? 'check';
+  const rest = args.slice(1);
+  const checker = fwScript('mosaic-ensure-sequential-thinking');
+
+  switch (action) {
+    case 'check':
+      delegateToScript(checker, ['--check', ...rest]);
+      break; // unreachable
+    case 'fix':
+    case 'apply':
+      delegateToScript(checker, rest);
+      break;
+    case 'start': {
+      console.log('[mosaic] Starting sequential-thinking MCP server...');
+      try {
+        execFileSync('npx', ['-y', '@modelcontextprotocol/server-sequential-thinking', ...rest], {
+          stdio: 'inherit',
+        });
+        process.exit(0);
+      } catch (err) {
+        process.exit((err as { status?: number }).status ?? 1);
+      }
+      break;
+    }
+    default:
+      console.error(`[mosaic] Unknown seq subcommand '${action}'. Use: check|fix|start`);
+      process.exit(1);
+  }
+}
+
+// ─── Upgrade ────────────────────────────────────────────────────────────────
+
+function runUpgrade(args: string[]): never {
+  checkMosaicHome();
+  const subcmd = args[0];
+
+  if (!subcmd || subcmd === 'release') {
+    delegateToScript(fwScript('mosaic-release-upgrade'), args.slice(subcmd === 'release' ? 1 : 0));
+  } else if (subcmd === 'check') {
+    delegateToScript(fwScript('mosaic-release-upgrade'), ['--dry-run', ...args.slice(1)]);
+  } else if (subcmd === 'project') {
+    delegateToScript(fwScript('mosaic-upgrade'), args.slice(1));
+  } else if (subcmd.startsWith('-')) {
+    delegateToScript(fwScript('mosaic-release-upgrade'), args);
+  } else {
+    delegateToScript(fwScript('mosaic-upgrade'), args);
+  }
+}
+
+// ─── Commander registration ─────────────────────────────────────────────────
+
+export function registerLaunchCommands(program: Command): void {
+  // Runtime launchers
+  for (const runtime of ['claude', 'codex', 'opencode', 'pi'] as const) {
+    program
+      .command(runtime)
+      .description(`Launch ${RUNTIME_LABELS[runtime]} with Mosaic injection`)
+      .allowUnknownOption(true)
+      .allowExcessArguments(true)
+      .action((_opts: unknown, cmd: Command) => {
+        launchRuntime(runtime, cmd.args, false);
+      });
+  }
+
+  // Yolo mode
+  program
+    .command('yolo <runtime>')
+    .description('Launch a runtime in dangerous-permissions mode (claude|codex|opencode|pi)')
+    .allowUnknownOption(true)
+    .allowExcessArguments(true)
+    .action((runtime: string, _opts: unknown, cmd: Command) => {
+      const valid: RuntimeName[] = ['claude', 'codex', 'opencode', 'pi'];
+      if (!valid.includes(runtime as RuntimeName)) {
+        console.error(
+          `[mosaic] ERROR: Unsupported yolo runtime '${runtime}'. Use: ${valid.join('|')}`,
+        );
+        process.exit(1);
+      }
+      launchRuntime(runtime as RuntimeName, cmd.args, true);
+    });
+
+  // Coord (mission orchestrator)
+  program
+    .command('coord')
+    .description('Mission coordinator tools (init, status, run, continue, resume)')
+    .allowUnknownOption(true)
+    .allowExcessArguments(true)
+    .action((_opts: unknown, cmd: Command) => {
+      runCoord(cmd.args);
+    });
+
+  // Prdy (PRD tools via local framework scripts)
+  program
+    .command('prdy')
+    .description('PRD creation and validation (init, update, validate, status)')
+    .allowUnknownOption(true)
+    .allowExcessArguments(true)
+    .action((_opts: unknown, cmd: Command) => {
+      runPrdyLocal(cmd.args);
+    });
+
+  // Seq (sequential-thinking MCP management)
+  program
+    .command('seq')
+    .description('sequential-thinking MCP management (check/fix/start)')
+    .allowUnknownOption(true)
+    .allowExcessArguments(true)
+    .action((_opts: unknown, cmd: Command) => {
+      runSeq(cmd.args);
+    });
+
+  // Upgrade (release + project)
+  program
+    .command('upgrade')
+    .description('Upgrade Mosaic release or project files')
+    .allowUnknownOption(true)
+    .allowExcessArguments(true)
+    .action((_opts: unknown, cmd: Command) => {
+      runUpgrade(cmd.args);
+    });
+
+  // Direct framework script delegates
+  const directCommands: Record<string, { desc: string; script: string }> = {
+    init: { desc: 'Generate SOUL.md (agent identity contract)', script: 'mosaic-init' },
+    doctor: { desc: 'Health audit — detect drift and missing files', script: 'mosaic-doctor' },
+    sync: { desc: 'Sync skills from canonical source', script: 'mosaic-sync-skills' },
+    bootstrap: {
+      desc: 'Bootstrap a repo with Mosaic standards',
+      script: 'mosaic-bootstrap-repo',
+    },
+  };
+
+  for (const [name, { desc, script }] of Object.entries(directCommands)) {
+    program
+      .command(name)
+      .description(desc)
+      .allowUnknownOption(true)
+      .allowExcessArguments(true)
+      .action((_opts: unknown, cmd: Command) => {
+        checkMosaicHome();
+        delegateToScript(fwScript(script), cmd.args);
+      });
+  }
+}

packages/cli/src/tui/app.tsx

@@ -15,6 +15,7 @@ import { useConversations } from './hooks/use-conversations.js';
 import { useSearch } from './hooks/use-search.js';
 import { executeHelp, executeStatus, executeHistory, commandRegistry } from './commands/index.js';
 import { fetchConversationMessages } from './gateway-api.js';
+import { expandFileRefs, hasFileRefs, handleAttachCommand } from './file-ref.js';
 
 export interface TuiAppProps {
   gatewayUrl: string;
@@ -85,6 +86,36 @@ export function TuiApp({
   // combo is handled by the top-level useInput handler (e.g. Ctrl+T → 't').
   const ctrlJustFired = useRef(false);
 
+  // Wrap sendMessage to expand @file references before sending
+  const sendMessageWithFileRefs = useCallback(
+    (content: string) => {
+      if (!hasFileRefs(content)) {
+        socket.sendMessage(content);
+        return;
+      }
+      void expandFileRefs(content)
+        .then(({ expandedMessage, filesAttached, errors }) => {
+          for (const err of errors) {
+            socket.addSystemMessage(err);
+          }
+          if (filesAttached.length > 0) {
+            socket.addSystemMessage(
+              `📎 Attached ${filesAttached.length} file(s): ${filesAttached.join(', ')}`,
+            );
+          }
+          socket.sendMessage(expandedMessage);
+        })
+        .catch((err: unknown) => {
+          socket.addSystemMessage(
+            `File expansion failed: ${err instanceof Error ? err.message : String(err)}`,
+          );
+          // Send original message without expansion
+          socket.sendMessage(content);
+        });
+    },
+    [socket],
+  );
+
   const handleLocalCommand = useCallback(
     (parsed: ParsedCommand) => {
       switch (parsed.command) {
@@ -123,9 +154,36 @@ export function TuiApp({
               socket.addSystemMessage('Failed to create new conversation.');
             });
           break;
+        case 'attach': {
+          if (!parsed.args) {
+            socket.addSystemMessage('Usage: /attach <file-path>');
+            break;
+          }
+          void handleAttachCommand(parsed.args)
+            .then(({ content, error }) => {
+              if (error) {
+                socket.addSystemMessage(`Attach error: ${error}`);
+              } else if (content) {
+                // Send the file content as a user message
+                socket.sendMessage(content);
+              }
+            })
+            .catch((err: unknown) => {
+              socket.addSystemMessage(
+                `Attach failed: ${err instanceof Error ? err.message : String(err)}`,
+              );
+            });
+          break;
+        }
         case 'stop':
-          // Currently no stop mechanism exposed — show feedback
+          if (socket.isStreaming && socket.socketRef.current?.connected && socket.conversationId) {
-          socket.addSystemMessage('Stop is not available for the current session.');
+            socket.socketRef.current.emit('abort', {
+              conversationId: socket.conversationId,
+            });
+            socket.addSystemMessage('Abort signal sent.');
+          } else {
+            socket.addSystemMessage('No active stream to stop.');
+          }
           break;
         case 'cost': {
           const u = socket.tokenUsage;
@@ -348,7 +406,7 @@ export function TuiApp({
           }
           setTuiInput(val);
         }}
-        onSubmit={socket.sendMessage}
+        onSubmit={sendMessageWithFileRefs}
         onSystemMessage={socket.addSystemMessage}
         onLocalCommand={handleLocalCommand}
         onGatewayCommand={handleGatewayCommand}

packages/cli/src/tui/commands/registry.ts

@@ -56,6 +56,22 @@ const LOCAL_COMMANDS: CommandDef[] = [
     available: true,
     scope: 'core',
   },
+  {
+    name: 'attach',
+    description: 'Attach a file to the next message (@file syntax also works inline)',
+    aliases: [],
+    args: [
+      {
+        name: 'path',
+        type: 'string' as const,
+        optional: false,
+        description: 'File path to attach',
+      },
+    ],
+    execution: 'local',
+    available: true,
+    scope: 'core',
+  },
   {
     name: 'new',
     description: 'Start a new conversation',

packages/cli/src/tui/file-ref.ts

@@ -0,0 +1,202 @@
+/**
+ * File reference expansion for TUI chat input.
+ *
+ * Detects @path/to/file patterns in user messages, reads the file contents,
+ * and inlines them as fenced code blocks in the message.
+ *
+ * Supports:
+ *   - @relative/path.ts
+ *   - @./relative/path.ts
+ *   - @/absolute/path.ts
+ *   - @~/home-relative/path.ts
+ *
+ * Also provides an /attach <path> command handler.
+ */
+
+import { readFile, stat } from 'node:fs/promises';
+import { resolve, extname, basename } from 'node:path';
+import { homedir } from 'node:os';
+
+const MAX_FILE_SIZE = 256 * 1024; // 256 KB
+const MAX_FILES_PER_MESSAGE = 10;
+
+/**
+ * Regex to detect @file references in user input.
+ * Matches @<path> where path starts with /, ./, ~/, or a word char,
+ * and continues until whitespace or end of string.
+ * Excludes @mentions that look like usernames (no dots/slashes).
+ */
+const FILE_REF_PATTERN = /(?:^|\s)@((?:\.{0,2}\/|~\/|[a-zA-Z0-9_])[^\s]+)/g;
+
+interface FileRefResult {
+  /** The expanded message text with file contents inlined */
+  expandedMessage: string;
+  /** Files that were successfully read */
+  filesAttached: string[];
+  /** Errors encountered while reading files */
+  errors: string[];
+}
+
+function resolveFilePath(ref: string): string {
+  if (ref.startsWith('~/')) {
+    return resolve(homedir(), ref.slice(2));
+  }
+  return resolve(process.cwd(), ref);
+}
+
+function getLanguageHint(filePath: string): string {
+  const ext = extname(filePath).toLowerCase();
+  const map: Record<string, string> = {
+    '.ts': 'typescript',
+    '.tsx': 'typescript',
+    '.js': 'javascript',
+    '.jsx': 'javascript',
+    '.py': 'python',
+    '.rb': 'ruby',
+    '.rs': 'rust',
+    '.go': 'go',
+    '.java': 'java',
+    '.c': 'c',
+    '.cpp': 'cpp',
+    '.h': 'c',
+    '.hpp': 'cpp',
+    '.cs': 'csharp',
+    '.sh': 'bash',
+    '.bash': 'bash',
+    '.zsh': 'zsh',
+    '.fish': 'fish',
+    '.json': 'json',
+    '.yaml': 'yaml',
+    '.yml': 'yaml',
+    '.toml': 'toml',
+    '.xml': 'xml',
+    '.html': 'html',
+    '.css': 'css',
+    '.scss': 'scss',
+    '.md': 'markdown',
+    '.sql': 'sql',
+    '.graphql': 'graphql',
+    '.dockerfile': 'dockerfile',
+    '.tf': 'terraform',
+    '.vue': 'vue',
+    '.svelte': 'svelte',
+  };
+  return map[ext] ?? '';
+}
+
+/**
+ * Check if the input contains any @file references.
+ */
+export function hasFileRefs(input: string): boolean {
+  FILE_REF_PATTERN.lastIndex = 0;
+  return FILE_REF_PATTERN.test(input);
+}
+
+/**
+ * Expand @file references in a message by reading file contents
+ * and appending them as fenced code blocks.
+ */
+export async function expandFileRefs(input: string): Promise<FileRefResult> {
+  const refs: string[] = [];
+  FILE_REF_PATTERN.lastIndex = 0;
+  let match;
+  while ((match = FILE_REF_PATTERN.exec(input)) !== null) {
+    const ref = match[1]!;
+    if (!refs.includes(ref)) {
+      refs.push(ref);
+    }
+  }
+
+  if (refs.length === 0) {
+    return { expandedMessage: input, filesAttached: [], errors: [] };
+  }
+
+  if (refs.length > MAX_FILES_PER_MESSAGE) {
+    return {
+      expandedMessage: input,
+      filesAttached: [],
+      errors: [`Too many file references (${refs.length}). Maximum is ${MAX_FILES_PER_MESSAGE}.`],
+    };
+  }
+
+  const filesAttached: string[] = [];
+  const errors: string[] = [];
+  const attachments: string[] = [];
+
+  for (const ref of refs) {
+    const filePath = resolveFilePath(ref);
+    try {
+      const info = await stat(filePath);
+      if (!info.isFile()) {
+        errors.push(`@${ref}: not a file`);
+        continue;
+      }
+      if (info.size > MAX_FILE_SIZE) {
+        errors.push(
+          `@${ref}: file too large (${(info.size / 1024).toFixed(0)} KB, limit ${MAX_FILE_SIZE / 1024} KB)`,
+        );
+        continue;
+      }
+      const content = await readFile(filePath, 'utf8');
+      const lang = getLanguageHint(filePath);
+      const name = basename(filePath);
+      attachments.push(`\n📎 ${ref} (${name}):\n\`\`\`${lang}\n${content}\n\`\`\``);
+      filesAttached.push(ref);
+    } catch (err) {
+      const msg = err instanceof Error ? err.message : String(err);
+      // Only report meaningful errors — ENOENT is common for false @mention matches
+      if (msg.includes('ENOENT')) {
+        // Check if this looks like a file path (has extension or slash)
+        if (ref.includes('/') || ref.includes('.')) {
+          errors.push(`@${ref}: file not found`);
+        }
+        // Otherwise silently skip — likely an @mention, not a file ref
+      } else {
+        errors.push(`@${ref}: ${msg}`);
+      }
+    }
+  }
+
+  if (attachments.length === 0) {
+    return { expandedMessage: input, filesAttached, errors };
+  }
+
+  const expandedMessage = input + '\n' + attachments.join('\n');
+  return { expandedMessage, filesAttached, errors };
+}
+
+/**
+ * Handle the /attach <path> command.
+ * Reads a file and returns the content formatted for inclusion in the chat.
+ */
+export async function handleAttachCommand(
+  args: string,
+): Promise<{ content: string; error?: string }> {
+  const filePath = args.trim();
+  if (!filePath) {
+    return { content: '', error: 'Usage: /attach <file-path>' };
+  }
+
+  const resolved = resolveFilePath(filePath);
+  try {
+    const info = await stat(resolved);
+    if (!info.isFile()) {
+      return { content: '', error: `Not a file: ${filePath}` };
+    }
+    if (info.size > MAX_FILE_SIZE) {
+      return {
+        content: '',
+        error: `File too large (${(info.size / 1024).toFixed(0)} KB, limit ${MAX_FILE_SIZE / 1024} KB)`,
+      };
+    }
+    const content = await readFile(resolved, 'utf8');
+    const lang = getLanguageHint(resolved);
+    const name = basename(resolved);
+    return {
+      content: `📎 Attached file: ${name} (${filePath})\n\`\`\`${lang}\n${content}\n\`\`\``,
+    };
+  } catch (err) {
+    const msg = err instanceof Error ? err.message : String(err);
+    return { content: '', error: `Failed to read file: ${msg}` };
+  }
+}

packages/cli/tsconfig.build.json

@@ -0,0 +1,4 @@
+{
+  "extends": "./tsconfig.json",
+  "exclude": ["node_modules", "dist", "src/**/*.test.ts", "src/**/*.spec.ts"]
+}

packages/coord/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/coord",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
   "exports": {

packages/db/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/db",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "type": "module",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",

packages/design-tokens/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/design-tokens",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "type": "module",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",

packages/forge/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/forge",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "type": "module",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",

packages/log/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/log",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "type": "module",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",

packages/macp/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/macp",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "type": "module",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",

packages/memory/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/memory",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "type": "module",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",

packages/mosaic/__tests__/platform/file-ops.test.ts

@@ -0,0 +1,88 @@
+import { describe, it, expect, beforeEach, afterEach } from 'vitest';
+import {
+  mkdtempSync,
+  mkdirSync,
+  writeFileSync,
+  readFileSync,
+  existsSync,
+  chmodSync,
+  rmSync,
+} from 'node:fs';
+import { join } from 'node:path';
+import { tmpdir } from 'node:os';
+import { syncDirectory } from '../../src/platform/file-ops.js';
+
+describe('syncDirectory', () => {
+  let tmpDir: string;
+
+  beforeEach(() => {
+    tmpDir = mkdtempSync(join(tmpdir(), 'mosaic-file-ops-'));
+  });
+
+  afterEach(() => {
+    rmSync(tmpDir, { recursive: true, force: true });
+  });
+
+  it('is a no-op when source and target are the same path', () => {
+    const dir = join(tmpDir, 'same');
+    mkdirSync(dir, { recursive: true });
+    writeFileSync(join(dir, 'file.txt'), 'hello');
+    // Should not throw even with read-only files
+    const gitDir = join(dir, '.git', 'objects', 'pack');
+    mkdirSync(gitDir, { recursive: true });
+    const packFile = join(gitDir, 'pack-abc.idx');
+    writeFileSync(packFile, 'data');
+    chmodSync(packFile, 0o444);
+
+    expect(() => syncDirectory(dir, dir)).not.toThrow();
+  });
+
+  it('skips nested .git directories when excludeGit is true', () => {
+    const src = join(tmpDir, 'src');
+    const dest = join(tmpDir, 'dest');
+
+    // Create source with a nested .git
+    mkdirSync(join(src, 'sources', 'skills', '.git', 'objects'), { recursive: true });
+    writeFileSync(join(src, 'sources', 'skills', '.git', 'objects', 'pack.idx'), 'git-data');
+    writeFileSync(join(src, 'sources', 'skills', 'SKILL.md'), 'skill content');
+    writeFileSync(join(src, 'README.md'), 'readme');
+
+    syncDirectory(src, dest, { excludeGit: true });
+
+    // .git contents should NOT be copied
+    expect(existsSync(join(dest, 'sources', 'skills', '.git'))).toBe(false);
+    // Normal files should be copied
+    expect(readFileSync(join(dest, 'sources', 'skills', 'SKILL.md'), 'utf-8')).toBe(
+      'skill content',
+    );
+    expect(readFileSync(join(dest, 'README.md'), 'utf-8')).toBe('readme');
+  });
+
+  it('copies nested .git directories when excludeGit is false', () => {
+    const src = join(tmpDir, 'src');
+    const dest = join(tmpDir, 'dest');
+
+    mkdirSync(join(src, 'sub', '.git'), { recursive: true });
+    writeFileSync(join(src, 'sub', '.git', 'HEAD'), 'ref: refs/heads/main');
+
+    syncDirectory(src, dest, { excludeGit: false });
+
+    expect(readFileSync(join(dest, 'sub', '.git', 'HEAD'), 'utf-8')).toBe('ref: refs/heads/main');
+  });
+
+  it('respects preserve option', () => {
+    const src = join(tmpDir, 'src');
+    const dest = join(tmpDir, 'dest');
+
+    mkdirSync(src, { recursive: true });
+    mkdirSync(dest, { recursive: true });
+    writeFileSync(join(src, 'SOUL.md'), 'new soul');
+    writeFileSync(join(dest, 'SOUL.md'), 'old soul');
+    writeFileSync(join(src, 'README.md'), 'new readme');
+
+    syncDirectory(src, dest, { preserve: ['SOUL.md'] });
+
+    expect(readFileSync(join(dest, 'SOUL.md'), 'utf-8')).toBe('old soul');
+    expect(readFileSync(join(dest, 'README.md'), 'utf-8')).toBe('new readme');
+  });
+});

packages/mosaic/__tests__/stages/detect-install.test.ts

@@ -65,4 +65,36 @@ describe('detectInstallStage', () => {
     expect(state.installAction).toBe('keep');
     expect(state.soul.agentName).toBe('TestAgent');
   });
+
+  it('pre-populates state when reconfiguring', async () => {
+    mkdirSync(join(tmpDir, 'bin'), { recursive: true });
+    writeFileSync(join(tmpDir, 'SOUL.md'), 'You are **Jarvis** in this session.');
+    writeFileSync(join(tmpDir, 'USER.md'), '**Name:** TestUser');
+
+    const p = new HeadlessPrompter({
+      'What would you like to do?': 'reconfigure',
+    });
+    const state = createState(tmpDir);
+    await detectInstallStage(p, state, mockConfig);
+
+    expect(state.installAction).toBe('reconfigure');
+    // Existing values loaded as defaults for reconfiguration
+    expect(state.soul.agentName).toBe('TestAgent');
+    expect(state.user.userName).toBe('TestUser');
+  });
+
+  it('does not pre-populate state on fresh reset', async () => {
+    mkdirSync(join(tmpDir, 'bin'), { recursive: true });
+    writeFileSync(join(tmpDir, 'SOUL.md'), 'You are **Jarvis** in this session.');
+
+    const p = new HeadlessPrompter({
+      'What would you like to do?': 'reset',
+    });
+    const state = createState(tmpDir);
+    await detectInstallStage(p, state, mockConfig);
+
+    expect(state.installAction).toBe('reset');
+    // Reset should NOT load existing values
+    expect(state.soul.agentName).toBeUndefined();
+  });
 });

packages/mosaic/framework/bin/mosaic

@@ -1,849 +0,0 @@
-#!/usr/bin/env bash
-set -euo pipefail
-
-# mosaic — Unified agent launcher and management CLI
-#
-# AGENTS.md is the global policy source for all agent sessions.
-# The launcher injects a composed runtime contract (AGENTS + runtime reference).
-#
-# Usage:
-#   mosaic claude [args...]       Launch Claude Code with runtime contract injected
-#   mosaic opencode [args...]     Launch OpenCode with runtime contract injected
-#   mosaic codex [args...]        Launch Codex with runtime contract injected
-#   mosaic yolo <runtime> [args...]  Launch runtime in dangerous-permissions mode
-#   mosaic --yolo <runtime> [args...]  Alias for yolo
-#   mosaic init [args...]         Generate SOUL.md interactively
-#   mosaic doctor [args...]       Health audit
-#   mosaic sync [args...]         Sync skills
-#   mosaic seq [subcommand]       sequential-thinking MCP management (check/fix/start)
-#   mosaic bootstrap <path>       Bootstrap a repo
-#   mosaic upgrade release         Upgrade installed Mosaic release
-#   mosaic upgrade check           Check release upgrade status (no changes)
-#   mosaic upgrade project [args]  Upgrade project-local stale files
-
-MOSAIC_HOME="${MOSAIC_HOME:-$HOME/.config/mosaic}"
-VERSION="0.1.0"
-
-usage() {
-  cat <<USAGE
-mosaic $VERSION — Unified agent launcher
-
-Usage: mosaic <command> [args...]
-
-Agent Launchers:
-  pi [args...]           Launch Pi with runtime contract injected (recommended)
-  claude [args...]       Launch Claude Code with runtime contract injected
-  opencode [args...]     Launch OpenCode with runtime contract injected
-  codex [args...]        Launch Codex with runtime contract injected
-  yolo <runtime> [args...]  Dangerous mode for claude|codex|opencode|pi
-  --yolo <runtime> [args...] Alias for yolo
-
-Management:
-  init [args...]         Generate SOUL.md (agent identity contract)
-  doctor [args...]       Audit runtime state and detect drift
-  sync [args...]         Sync skills from canonical source
-  seq [subcommand]       sequential-thinking MCP management:
-                         check [--runtime <r>] [--strict]
-                         fix [--runtime <r>]
-                         start
-  bootstrap <path>       Bootstrap a repo with Mosaic standards
-  upgrade [mode] [args]  Upgrade release (default) or project files
-  upgrade check          Check release upgrade status (no changes)
-  release-upgrade [...]  Upgrade installed Mosaic release
-  project-upgrade [...]  Clean up stale SOUL.md/CLAUDE.md in a project
-
-PRD:
-  prdy <subcommand>      PRD creation and validation
-                         init    Create docs/PRD.md via guided runtime session
-                         update  Update existing PRD via guided runtime session
-                         validate Check PRD completeness (bash-only)
-                         status  Quick PRD health check (one-liner)
-
-Coordinator (r0):
-  coord <subcommand>     Manual coordinator tools
-                         init    Initialize a new mission
-                         mission Show mission progress dashboard
-                         status  Check agent session health
-                         continue Generate continuation prompt
-                         run     Generate context and launch selected runtime
-                         resume  Crash recovery
-
-Options:
-  -h, --help             Show this help
-  -v, --version          Show version
-
-All arguments after the command are forwarded to the target CLI.
-USAGE
-}
-
-# Pre-flight checks
-check_mosaic_home() {
-  if [[ ! -d "$MOSAIC_HOME" ]]; then
-    echo "[mosaic] ERROR: ~/.config/mosaic not found." >&2
-    echo "[mosaic] Install with: bash <(curl -fsSL https://git.mosaicstack.dev/mosaic/mosaic-stack/raw/branch/main/tools/install.sh)" >&2
-    exit 1
-  fi
-}
-
-check_agents_md() {
-  if [[ ! -f "$MOSAIC_HOME/AGENTS.md" ]]; then
-    echo "[mosaic] ERROR: ~/.config/mosaic/AGENTS.md not found." >&2
-    echo "[mosaic] Re-run the installer: bash <(curl -fsSL https://git.mosaicstack.dev/mosaic/mosaic-stack/raw/branch/main/tools/install.sh)" >&2
-    exit 1
-  fi
-}
-
-check_soul() {
-  if [[ ! -f "$MOSAIC_HOME/SOUL.md" ]]; then
-    echo "[mosaic] SOUL.md not found. Running mosaic init..."
-    "$MOSAIC_HOME/bin/mosaic-init"
-  fi
-}
-
-check_runtime() {
-  local cmd="$1"
-  if ! command -v "$cmd" >/dev/null 2>&1; then
-    echo "[mosaic] ERROR: '$cmd' not found in PATH." >&2
-    echo "[mosaic] Install $cmd before launching." >&2
-    exit 1
-  fi
-}
-
-check_sequential_thinking() {
-  local runtime="${1:-all}"
-  local checker="$MOSAIC_HOME/bin/mosaic-ensure-sequential-thinking"
-  if [[ ! -x "$checker" ]]; then
-    echo "[mosaic] ERROR: sequential-thinking checker missing: $checker" >&2
-    exit 1
-  fi
-  if ! "$checker" --check --runtime "$runtime" >/dev/null 2>&1; then
-    echo "[mosaic] ERROR: sequential-thinking MCP is required but not configured." >&2
-    echo "[mosaic] Fix config: $checker --runtime $runtime" >&2
-    echo "[mosaic] Or run: mosaic seq fix --runtime $runtime" >&2
-    echo "[mosaic] Manual server start: mosaic seq start" >&2
-    exit 1
-  fi
-}
-
-runtime_contract_path() {
-  local runtime="$1"
-  case "$runtime" in
-    claude) echo "$MOSAIC_HOME/runtime/claude/RUNTIME.md" ;;
-    codex) echo "$MOSAIC_HOME/runtime/codex/RUNTIME.md" ;;
-    opencode) echo "$MOSAIC_HOME/runtime/opencode/RUNTIME.md" ;;
-    pi) echo "$MOSAIC_HOME/runtime/pi/RUNTIME.md" ;;
-    *)
-      echo "[mosaic] ERROR: unsupported runtime '$runtime' for runtime contract." >&2
-      exit 1
-      ;;
-  esac
-}
-
-build_runtime_prompt() {
-  local runtime="$1"
-  local runtime_file
-  runtime_file="$(runtime_contract_path "$runtime")"
-  if [[ ! -f "$runtime_file" ]]; then
-    echo "[mosaic] ERROR: runtime contract not found: $runtime_file" >&2
-    exit 1
-  fi
-
-  # Inject active mission context FIRST so the agent sees it immediately
-  local mission_file=".mosaic/orchestrator/mission.json"
-  if [[ -f "$mission_file" ]] && command -v jq &>/dev/null; then
-    local m_status
-    m_status="$(jq -r '.status // "inactive"' "$mission_file" 2>/dev/null)"
-    if [[ "$m_status" == "active" || "$m_status" == "paused" ]]; then
-      local m_name m_id m_count m_completed
-      m_name="$(jq -r '.name // "unnamed"' "$mission_file")"
-      m_id="$(jq -r '.mission_id // ""' "$mission_file")"
-      m_count="$(jq '.milestones | length' "$mission_file")"
-      m_completed="$(jq '[.milestones[] | select(.status == "completed")] | length' "$mission_file")"
-
-      cat <<MISSION_EOF
-# ACTIVE MISSION — HARD GATE (Read Before Anything Else)
-
-An active orchestration mission exists in this project. This is a BLOCKING requirement.
-
-**Mission:** $m_name
-**ID:** $m_id
-**Status:** $m_status
-**Milestones:** $m_completed / $m_count completed
-
-## MANDATORY — Before ANY Response to the User
-
-You MUST complete these steps before responding to any user message, including simple greetings:
-
-1. Read \`~/.config/mosaic/guides/ORCHESTRATOR-PROTOCOL.md\` (mission lifecycle protocol)
-2. Read \`docs/MISSION-MANIFEST.md\` for full mission scope, milestones, and success criteria
-3. Read the latest scratchpad in \`docs/scratchpads/\` for session history, decisions, and corrections
-4. Read \`docs/TASKS.md\` for current task state (what is done, what is next)
-5. After reading all four, acknowledge the mission state to the user before proceeding
-
-If the user gives a task, execute it within the mission context. If no task is given, present mission status and ask how to proceed.
-
-MISSION_EOF
-    fi
-  fi
-
-  # Inject PRD status so the agent knows requirements state
-  local prd_file="docs/PRD.md"
-  if [[ -f "$prd_file" ]]; then
-    local prd_sections=0
-    local prd_assumptions=0
-    for entry in "Problem Statement|^#{2,3} .*(problem statement|objective)" \
-                 "Scope / Non-Goals|^#{2,3} .*(scope|non.goal|out of scope|in.scope)" \
-                 "User Stories / Requirements|^#{2,3} .*(user stor|stakeholder|user.*requirement)" \
-                 "Functional Requirements|^#{2,3} .*functional requirement" \
-                 "Non-Functional Requirements|^#{2,3} .*non.functional" \
-                 "Acceptance Criteria|^#{2,3} .*acceptance criteria" \
-                 "Technical Considerations|^#{2,3} .*(technical consideration|constraint|dependenc)" \
-                 "Risks / Open Questions|^#{2,3} .*(risk|open question)" \
-                 "Success Metrics / Testing|^#{2,3} .*(success metric|test|verification)" \
-                 "Milestones / Delivery|^#{2,3} .*(milestone|delivery|scope version)"; do
-      local pattern="${entry#*|}"
-      grep -qiE "$pattern" "$prd_file" 2>/dev/null && prd_sections=$((prd_sections + 1))
-    done
-    prd_assumptions=$(grep -c 'ASSUMPTION:' "$prd_file" 2>/dev/null || echo 0)
-
-    local prd_status="ready"
-    (( prd_sections < 10 )) && prd_status="incomplete ($prd_sections/10 sections)"
-
-    cat <<PRD_EOF
-
-# PRD Status
-
-- **File:** docs/PRD.md
-- **Status:** $prd_status
-- **Assumptions:** $prd_assumptions
-
-PRD_EOF
-  fi
-
-  cat <<'EOF'
-# Mosaic Launcher Runtime Contract (Hard Gate)
-
-This contract is injected by `mosaic` launch and is mandatory.
-
-First assistant response MUST start with exactly one mode declaration line:
-1. Orchestration mission: `Now initiating Orchestrator mode...`
-2. Implementation mission: `Now initiating Delivery mode...`
-3. Review-only mission: `Now initiating Review mode...`
-
-No tool call or implementation step may occur before that first line.
-
-Mosaic hard gates OVERRIDE runtime-default caution for routine delivery operations.
-For required push/merge/issue-close/release actions, execute without routine confirmation prompts.
-
-EOF
-
-  cat "$MOSAIC_HOME/AGENTS.md"
-
-  if [[ -f "$MOSAIC_HOME/USER.md" ]]; then
-    printf '\n\n# User Profile\n\n'
-    cat "$MOSAIC_HOME/USER.md"
-  fi
-
-  if [[ -f "$MOSAIC_HOME/TOOLS.md" ]]; then
-    printf '\n\n# Machine Tools\n\n'
-    cat "$MOSAIC_HOME/TOOLS.md"
-  fi
-
-  printf '\n\n# Runtime-Specific Contract\n\n'
-  cat "$runtime_file"
-}
-
-# Ensure runtime contract is present at the runtime's native config path.
-# Used for runtimes that do not support CLI prompt injection.
-ensure_runtime_config() {
-  local runtime="$1"
-  local dst="$2"
-  local tmp
-  tmp="$(mktemp)"
-  mkdir -p "$(dirname "$dst")"
-  build_runtime_prompt "$runtime" > "$tmp"
-  if ! cmp -s "$tmp" "$dst" 2>/dev/null; then
-    mv "$tmp" "$dst"
-  else
-    rm -f "$tmp"
-  fi
-}
-
-# Detect active mission and return an initial prompt if one exists.
-# Sets MOSAIC_MISSION_PROMPT as a side effect.
-_detect_mission_prompt() {
-  MOSAIC_MISSION_PROMPT=""
-  local mission_file=".mosaic/orchestrator/mission.json"
-  if [[ -f "$mission_file" ]] && command -v jq &>/dev/null; then
-    local m_status
-    m_status="$(jq -r '.status // "inactive"' "$mission_file" 2>/dev/null)"
-    if [[ "$m_status" == "active" || "$m_status" == "paused" ]]; then
-      local m_name
-      m_name="$(jq -r '.name // "unnamed"' "$mission_file")"
-      MOSAIC_MISSION_PROMPT="Active mission detected: ${m_name}. Read the mission state files and report status."
-    fi
-  fi
-}
-
-# Write a session lock if an active mission exists in the current directory.
-# Called before exec so $$ captures the PID that will become the agent process.
-_write_launcher_session_lock() {
-  local runtime="$1"
-  local mission_file=".mosaic/orchestrator/mission.json"
-  local lock_file=".mosaic/orchestrator/session.lock"
-
-  # Only write lock if mission exists and is active
-  [[ -f "$mission_file" ]] || return 0
-  command -v jq &>/dev/null || return 0
-
-  local m_status
-  m_status="$(jq -r '.status // "inactive"' "$mission_file" 2>/dev/null)"
-  [[ "$m_status" == "active" || "$m_status" == "paused" ]] || return 0
-
-  local session_id
-  session_id="${runtime}-$(date +%Y%m%d-%H%M%S)-$$"
-
-  jq -n \
-    --arg sid "$session_id" \
-    --arg rt "$runtime" \
-    --arg pid "$$" \
-    --arg ts "$(date -u +%Y-%m-%dT%H:%M:%SZ)" \
-    --arg pp "$(pwd)" \
-    --arg mid "" \
-    '{
-      session_id: $sid,
-      runtime: $rt,
-      pid: ($pid | tonumber),
-      started_at: $ts,
-      project_path: $pp,
-      milestone_id: $mid
-    }' > "$lock_file"
-}
-
-# Clean up session lock on exit (covers normal exit + signals).
-# Registered via trap after _write_launcher_session_lock succeeds.
-_cleanup_session_lock() {
-  rm -f ".mosaic/orchestrator/session.lock" 2>/dev/null
-}
-
-# Launcher functions
-launch_claude() {
-  check_mosaic_home
-  check_agents_md
-  check_soul
-  check_runtime "claude"
-  check_sequential_thinking "claude"
-
-  _check_resumable_session
-
-  # Claude supports --append-system-prompt for direct injection
-  local runtime_prompt
-  runtime_prompt="$(build_runtime_prompt "claude")"
-
-  # If active mission exists and no user prompt was given, inject initial prompt
-  _detect_mission_prompt
-  _write_launcher_session_lock "claude"
-  trap _cleanup_session_lock EXIT INT TERM
-  if [[ -n "$MOSAIC_MISSION_PROMPT" && $# -eq 0 ]]; then
-    echo "[mosaic] Launching Claude Code (active mission detected)..."
-    exec claude --append-system-prompt "$runtime_prompt" "$MOSAIC_MISSION_PROMPT"
-  else
-    echo "[mosaic] Launching Claude Code..."
-    exec claude --append-system-prompt "$runtime_prompt" "$@"
-  fi
-}
-
-launch_opencode() {
-  check_mosaic_home
-  check_agents_md
-  check_soul
-  check_runtime "opencode"
-  check_sequential_thinking "opencode"
-
-  _check_resumable_session
-
-  # OpenCode reads from ~/.config/opencode/AGENTS.md
-  ensure_runtime_config "opencode" "$HOME/.config/opencode/AGENTS.md"
-  _write_launcher_session_lock "opencode"
-  trap _cleanup_session_lock EXIT INT TERM
-  echo "[mosaic] Launching OpenCode..."
-  exec opencode "$@"
-}
-
-launch_codex() {
-  check_mosaic_home
-  check_agents_md
-  check_soul
-  check_runtime "codex"
-  check_sequential_thinking "codex"
-
-  _check_resumable_session
-
-  # Codex reads from ~/.codex/instructions.md
-  ensure_runtime_config "codex" "$HOME/.codex/instructions.md"
-  _detect_mission_prompt
-  _write_launcher_session_lock "codex"
-  trap _cleanup_session_lock EXIT INT TERM
-  if [[ -n "$MOSAIC_MISSION_PROMPT" && $# -eq 0 ]]; then
-    echo "[mosaic] Launching Codex (active mission detected)..."
-    exec codex "$MOSAIC_MISSION_PROMPT"
-  else
-    echo "[mosaic] Launching Codex..."
-    exec codex "$@"
-  fi
-}
-
-launch_pi() {
-  check_mosaic_home
-  check_agents_md
-  check_soul
-  check_runtime "pi"
-  # Pi has native thinking levels — no sequential-thinking gate required
-
-  _check_resumable_session
-
-  local runtime_prompt
-  runtime_prompt="$(build_runtime_prompt "pi")"
-
-  # Build skill args from Mosaic skills directories (canonical + local)
-  local -a skill_args=()
-  for skills_root in "$MOSAIC_HOME/skills" "$MOSAIC_HOME/skills-local"; do
-    [[ -d "$skills_root" ]] || continue
-    for skill_dir in "$skills_root"/*/; do
-      [[ -f "${skill_dir}SKILL.md" ]] && skill_args+=(--skill "$skill_dir")
-    done
-  done
-
-  # Load Mosaic extension if present
-  local -a ext_args=()
-  local mosaic_ext="$MOSAIC_HOME/runtime/pi/mosaic-extension.ts"
-  [[ -f "$mosaic_ext" ]] && ext_args=(--extension "$mosaic_ext")
-
-  _detect_mission_prompt
-  _write_launcher_session_lock "pi"
-  trap _cleanup_session_lock EXIT INT TERM
-  if [[ -n "$MOSAIC_MISSION_PROMPT" && $# -eq 0 ]]; then
-    echo "[mosaic] Launching Pi (active mission detected)..."
-    exec pi --append-system-prompt "$runtime_prompt" \
-       "${skill_args[@]}" "${ext_args[@]}" "$MOSAIC_MISSION_PROMPT"
-  else
-    echo "[mosaic] Launching Pi..."
-    exec pi --append-system-prompt "$runtime_prompt" \
-       "${skill_args[@]}" "${ext_args[@]}" "$@"
-  fi
-}
-
-launch_yolo() {
-  if [[ $# -eq 0 ]]; then
-    echo "[mosaic] ERROR: yolo requires a runtime (claude|codex|opencode|pi)." >&2
-    echo "[mosaic] Example: mosaic yolo claude" >&2
-    exit 1
-  fi
-
-  local runtime="$1"
-  shift
-
-  case "$runtime" in
-    claude)
-      check_mosaic_home
-      check_agents_md
-      check_soul
-      check_runtime "claude"
-      check_sequential_thinking "claude"
-
-      # Claude uses an explicit dangerous permissions flag.
-      local runtime_prompt
-      runtime_prompt="$(build_runtime_prompt "claude")"
-
-      _detect_mission_prompt
-      _write_launcher_session_lock "claude"
-      trap _cleanup_session_lock EXIT INT TERM
-      if [[ -n "$MOSAIC_MISSION_PROMPT" && $# -eq 0 ]]; then
-        echo "[mosaic] Launching Claude Code in YOLO mode (active mission detected)..."
-        exec claude --dangerously-skip-permissions --append-system-prompt "$runtime_prompt" "$MOSAIC_MISSION_PROMPT"
-      else
-        echo "[mosaic] Launching Claude Code in YOLO mode (dangerous permissions enabled)..."
-        exec claude --dangerously-skip-permissions --append-system-prompt "$runtime_prompt" "$@"
-      fi
-      ;;
-    codex)
-      check_mosaic_home
-      check_agents_md
-      check_soul
-      check_runtime "codex"
-      check_sequential_thinking "codex"
-
-      # Codex reads instructions.md from ~/.codex and supports a direct dangerous flag.
-      ensure_runtime_config "codex" "$HOME/.codex/instructions.md"
-      _detect_mission_prompt
-      _write_launcher_session_lock "codex"
-      trap _cleanup_session_lock EXIT INT TERM
-      if [[ -n "$MOSAIC_MISSION_PROMPT" && $# -eq 0 ]]; then
-        echo "[mosaic] Launching Codex in YOLO mode (active mission detected)..."
-        exec codex --dangerously-bypass-approvals-and-sandbox "$MOSAIC_MISSION_PROMPT"
-      else
-        echo "[mosaic] Launching Codex in YOLO mode (dangerous permissions enabled)..."
-        exec codex --dangerously-bypass-approvals-and-sandbox "$@"
-      fi
-      ;;
-    opencode)
-      check_mosaic_home
-      check_agents_md
-      check_soul
-      check_runtime "opencode"
-      check_sequential_thinking "opencode"
-
-      # OpenCode defaults to allow-all permissions unless user config restricts them.
-      ensure_runtime_config "opencode" "$HOME/.config/opencode/AGENTS.md"
-      _write_launcher_session_lock "opencode"
-      trap _cleanup_session_lock EXIT INT TERM
-      echo "[mosaic] Launching OpenCode in YOLO mode..."
-      exec opencode "$@"
-      ;;
-    pi)
-      # Pi has no permission restrictions — yolo is identical to normal launch
-      launch_pi "$@"
-      ;;
-    *)
-      echo "[mosaic] ERROR: Unsupported yolo runtime '$runtime'. Use claude|codex|opencode|pi." >&2
-      exit 1
-      ;;
-  esac
-}
-
-# Delegate to existing scripts
-run_init() {
-  # Prefer wizard if Node.js and bundle are available
-  local wizard_bin="$MOSAIC_HOME/dist/mosaic-wizard.mjs"
-  if command -v node >/dev/null 2>&1 && [[ -f "$wizard_bin" ]]; then
-    exec node "$wizard_bin" "$@"
-  fi
-  # Fallback to legacy bash wizard
-  check_mosaic_home
-  exec "$MOSAIC_HOME/bin/mosaic-init" "$@"
-}
-
-run_doctor() {
-  check_mosaic_home
-  exec "$MOSAIC_HOME/bin/mosaic-doctor" "$@"
-}
-
-run_sync() {
-  check_mosaic_home
-  exec "$MOSAIC_HOME/bin/mosaic-sync-skills" "$@"
-}
-
-run_seq() {
-  check_mosaic_home
-  local checker="$MOSAIC_HOME/bin/mosaic-ensure-sequential-thinking"
-  local action="${1:-check}"
-
-  case "$action" in
-    check)
-      shift || true
-      exec "$checker" --check "$@"
-      ;;
-    fix|apply)
-      shift || true
-      exec "$checker" "$@"
-      ;;
-    start)
-      shift || true
-      check_runtime "npx"
-      echo "[mosaic] Starting sequential-thinking MCP server..."
-      exec npx -y @modelcontextprotocol/server-sequential-thinking "$@"
-      ;;
-    *)
-      echo "[mosaic] ERROR: Unknown seq subcommand '$action'." >&2
-      echo "[mosaic] Use: mosaic seq check|fix|start" >&2
-      exit 1
-      ;;
-  esac
-}
-
-run_coord() {
-  check_mosaic_home
-  local runtime="claude"
-  local runtime_flag=""
-  local yolo_flag=""
-  local -a coord_args=()
-
-  while [[ $# -gt 0 ]]; do
-    case "$1" in
-      --claude|--codex|--pi)
-        local selected_runtime="${1#--}"
-        if [[ -n "$runtime_flag" ]] && [[ "$runtime" != "$selected_runtime" ]]; then
-          echo "[mosaic] ERROR: --claude, --codex, and --pi are mutually exclusive for 'mosaic coord'." >&2
-          exit 1
-        fi
-        runtime="$selected_runtime"
-        runtime_flag="$1"
-        shift
-        ;;
-      --yolo)
-        yolo_flag="--yolo"
-        shift
-        ;;
-      *)
-        coord_args+=("$1")
-        shift
-        ;;
-    esac
-  done
-
-  local subcmd="${coord_args[0]:-help}"
-  if (( ${#coord_args[@]} > 1 )); then
-    set -- "${coord_args[@]:1}"
-  else
-    set --
-  fi
-
-  local tool_dir="$MOSAIC_HOME/tools/orchestrator"
-
-  case "$subcmd" in
-    status|session)
-      MOSAIC_COORD_RUNTIME="$runtime" exec bash "$tool_dir/session-status.sh" "$@"
-      ;;
-    init)
-      MOSAIC_COORD_RUNTIME="$runtime" exec bash "$tool_dir/mission-init.sh" "$@"
-      ;;
-    mission|progress)
-      MOSAIC_COORD_RUNTIME="$runtime" exec bash "$tool_dir/mission-status.sh" "$@"
-      ;;
-    continue|next)
-      MOSAIC_COORD_RUNTIME="$runtime" exec bash "$tool_dir/continue-prompt.sh" "$@"
-      ;;
-    run|start)
-      MOSAIC_COORD_RUNTIME="$runtime" exec bash "$tool_dir/session-run.sh" ${yolo_flag:+"$yolo_flag"} "$@"
-      ;;
-    smoke|test)
-      MOSAIC_COORD_RUNTIME="$runtime" exec bash "$tool_dir/smoke-test.sh" "$@"
-      ;;
-    resume|recover)
-      MOSAIC_COORD_RUNTIME="$runtime" exec bash "$tool_dir/session-resume.sh" "$@"
-      ;;
-    help|*)
-      cat <<COORD_USAGE
-mosaic coord — r0 manual coordinator tools
-
-Commands:
-  init --name <name> [opts]   Initialize a new mission
-  mission [--project <path>]  Show mission progress dashboard
-  status [--project <path>]   Check agent session health
-  continue [--project <path>] Generate continuation prompt for next session
-  run [--project <path>]      Generate context and launch selected runtime
-  smoke                       Run orchestration behavior smoke checks
-  resume [--project <path>]   Crash recovery (detect dirty state, generate fix)
-
-Runtime:
-  --claude                    Use Claude runtime hints/prompts (default)
-  --codex                     Use Codex runtime hints/prompts
-  --pi                        Use Pi runtime hints/prompts
-  --yolo                      Launch runtime in dangerous/skip-permissions mode (run only)
-
-Examples:
-  mosaic coord init --name "Security Fix" --milestones "Critical,High,Medium"
-  mosaic coord mission
-  mosaic coord --codex mission
-  mosaic coord --pi run
-  mosaic coord continue --copy
-  mosaic coord run
-  mosaic coord run --codex
-  mosaic coord --yolo run
-  mosaic coord smoke
-  mosaic coord continue --codex --copy
-
-COORD_USAGE
-      ;;
-  esac
-}
-
-# Resume advisory — prints warning if active mission or stale session detected
-_check_resumable_session() {
-  local mission_file=".mosaic/orchestrator/mission.json"
-  local lock_file=".mosaic/orchestrator/session.lock"
-
-  command -v jq &>/dev/null || return 0
-
-  if [[ -f "$lock_file" ]]; then
-    local pid
-    pid="$(jq -r '.pid // 0' "$lock_file" 2>/dev/null)"
-    if [[ -n "$pid" ]] && [[ "$pid" != "0" ]] && ! kill -0 "$pid" 2>/dev/null; then
-      # Stale lock from a dead session — clean it up
-      rm -f "$lock_file"
-      echo "[mosaic] Cleaned up stale session lock (PID $pid no longer running)."
-      echo ""
-    fi
-  elif [[ -f "$mission_file" ]]; then
-    local status
-    status="$(jq -r '.status // "inactive"' "$mission_file" 2>/dev/null)"
-    if [[ "$status" == "active" ]]; then
-      echo "[mosaic] Active mission detected. Generate continuation prompt with:"
-      echo "[mosaic]   mosaic coord continue"
-      echo ""
-    fi
-  fi
-}
-
-run_prdy() {
-  check_mosaic_home
-  local runtime="claude"
-  local runtime_flag=""
-  local -a prdy_args=()
-
-  while [[ $# -gt 0 ]]; do
-    case "$1" in
-      --claude|--codex|--pi)
-        local selected_runtime="${1#--}"
-        if [[ -n "$runtime_flag" ]] && [[ "$runtime" != "$selected_runtime" ]]; then
-          echo "[mosaic] ERROR: --claude, --codex, and --pi are mutually exclusive for 'mosaic prdy'." >&2
-          exit 1
-        fi
-        runtime="$selected_runtime"
-        runtime_flag="$1"
-        shift
-        ;;
-      *)
-        prdy_args+=("$1")
-        shift
-        ;;
-    esac
-  done
-
-  local subcmd="${prdy_args[0]:-help}"
-  if (( ${#prdy_args[@]} > 1 )); then
-    set -- "${prdy_args[@]:1}"
-  else
-    set --
-  fi
-
-  local tool_dir="$MOSAIC_HOME/tools/prdy"
-
-  case "$subcmd" in
-    init)
-      MOSAIC_PRDY_RUNTIME="$runtime" exec bash "$tool_dir/prdy-init.sh" "$@"
-      ;;
-    update)
-      MOSAIC_PRDY_RUNTIME="$runtime" exec bash "$tool_dir/prdy-update.sh" "$@"
-      ;;
-    validate|check)
-      MOSAIC_PRDY_RUNTIME="$runtime" exec bash "$tool_dir/prdy-validate.sh" "$@"
-      ;;
-    status)
-      exec bash "$tool_dir/prdy-status.sh" "$@"
-      ;;
-    help|*)
-      cat <<PRDY_USAGE
-mosaic prdy — PRD creation and validation tools
-
-Commands:
-  init [--project <path>] [--name <feature>]   Create docs/PRD.md via guided runtime session
-  update [--project <path>]                    Update existing docs/PRD.md via guided runtime session
-  validate [--project <path>]                  Check PRD completeness against Mosaic guide (bash-only)
-  status [--project <path>] [--format short|json]  Quick PRD health check (one-liner)
-
-Runtime:
-  --claude                    Use Claude runtime (default)
-  --codex                     Use Codex runtime
-  --pi                        Use Pi runtime
-
-Examples:
-  mosaic prdy init --name "User Authentication"
-  mosaic prdy update
-  mosaic prdy --pi init --name "User Authentication"
-  mosaic prdy --codex init --name "User Authentication"
-  mosaic prdy validate
-
-Output location: docs/PRD.md (per Mosaic PRD guide)
-
-PRDY_USAGE
-      ;;
-  esac
-}
-
-run_bootstrap() {
-  check_mosaic_home
-  exec "$MOSAIC_HOME/bin/mosaic-bootstrap-repo" "$@"
-}
-
-run_release_upgrade() {
-  check_mosaic_home
-  exec "$MOSAIC_HOME/bin/mosaic-release-upgrade" "$@"
-}
-
-run_project_upgrade() {
-  check_mosaic_home
-  exec "$MOSAIC_HOME/bin/mosaic-upgrade" "$@"
-}
-
-run_upgrade() {
-  check_mosaic_home
-
-  # Default: upgrade installed release
-  if [[ $# -eq 0 ]]; then
-    run_release_upgrade
-  fi
-
-  case "$1" in
-    release)
-      shift
-      run_release_upgrade "$@"
-      ;;
-    check)
-      shift
-      run_release_upgrade --dry-run "$@"
-      ;;
-    project)
-      shift
-      run_project_upgrade "$@"
-      ;;
-
-    # Backward compatibility for historical project-upgrade usage.
-    --all|--root)
-      run_project_upgrade "$@"
-      ;;
-    --dry-run|--ref|--keep|--overwrite|-y|--yes)
-      run_release_upgrade "$@"
-      ;;
-    -*)
-      run_release_upgrade "$@"
-      ;;
-    *)
-      run_project_upgrade "$@"
-      ;;
-  esac
-}
-
-# Main router
-if [[ $# -eq 0 ]]; then
-  usage
-  exit 0
-fi
-
-command="$1"
-shift
-
-case "$command" in
-  pi)         launch_pi "$@" ;;
-  claude)     launch_claude "$@" ;;
-  opencode)   launch_opencode "$@" ;;
-  codex)      launch_codex "$@" ;;
-  yolo|--yolo) launch_yolo "$@" ;;
-  init)       run_init "$@" ;;
-  doctor)     run_doctor "$@" ;;
-  sync)       run_sync "$@" ;;
-  seq)        run_seq "$@" ;;
-  bootstrap)  run_bootstrap "$@" ;;
-  prdy)       run_prdy "$@" ;;
-  coord)      run_coord "$@" ;;
-  upgrade)    run_upgrade "$@" ;;
-  release-upgrade) run_release_upgrade "$@" ;;
-  project-upgrade) run_project_upgrade "$@" ;;
-  help|-h|--help)  usage ;;
-  version|-v|--version) echo "mosaic $VERSION" ;;
-  *)
-    echo "[mosaic] Unknown command: $command" >&2
-    echo "[mosaic] Run 'mosaic --help' for usage." >&2
-    exit 1
-    ;;
-esac

packages/mosaic/framework/bin/mosaic.ps1

@@ -1,437 +0,0 @@
-# mosaic.ps1 — Unified agent launcher and management CLI (Windows)
-#
-# AGENTS.md is the global policy source for all agent sessions.
-# The launcher injects a composed runtime contract (AGENTS + runtime reference).
-#
-# Usage:
-#   mosaic claude [args...]       Launch Claude Code with runtime contract injected
-#   mosaic opencode [args...]     Launch OpenCode with runtime contract injected
-#   mosaic codex [args...]        Launch Codex with runtime contract injected
-#   mosaic yolo <runtime> [args...]  Launch runtime in dangerous-permissions mode
-#   mosaic --yolo <runtime> [args...]  Alias for yolo
-#   mosaic init [args...]         Generate SOUL.md interactively
-#   mosaic doctor [args...]       Health audit
-#   mosaic sync [args...]         Sync skills
-$ErrorActionPreference = "Stop"
-
-$MosaicHome = if ($env:MOSAIC_HOME) { $env:MOSAIC_HOME } else { Join-Path $env:USERPROFILE ".config\mosaic" }
-$Version = "0.1.0"
-
-function Show-Usage {
-    Write-Host @"
-mosaic $Version - Unified agent launcher
-
-Usage: mosaic <command> [args...]
-
-Agent Launchers:
-  claude [args...]       Launch Claude Code with runtime contract injected
-  opencode [args...]     Launch OpenCode with runtime contract injected
-  codex [args...]        Launch Codex with runtime contract injected
-  yolo <runtime> [args...]  Dangerous mode for claude|codex|opencode
-  --yolo <runtime> [args...] Alias for yolo
-
-Management:
-  init [args...]         Generate SOUL.md (agent identity contract)
-  doctor [args...]       Audit runtime state and detect drift
-  sync [args...]         Sync skills from canonical source
-  bootstrap <path>       Bootstrap a repo with Mosaic standards
-  upgrade [mode] [args]  Upgrade release (default) or project files
-  upgrade check          Check release upgrade status (no changes)
-  release-upgrade [...]  Upgrade installed Mosaic release
-  project-upgrade [...]  Clean up stale SOUL.md/CLAUDE.md in a project
-
-Options:
-  -h, --help             Show this help
-  -v, --version          Show version
-"@
-}
-
-function Assert-MosaicHome {
-    if (-not (Test-Path $MosaicHome)) {
-        Write-Host "[mosaic] ERROR: ~/.config/mosaic not found." -ForegroundColor Red
-        Write-Host "[mosaic] Install with: bash <(curl -fsSL https://git.mosaicstack.dev/mosaic/mosaic-stack/raw/branch/main/tools/install.sh)"
-        exit 1
-    }
-}
-
-function Assert-AgentsMd {
-    $agentsPath = Join-Path $MosaicHome "AGENTS.md"
-    if (-not (Test-Path $agentsPath)) {
-        Write-Host "[mosaic] ERROR: ~/.config/mosaic/AGENTS.md not found." -ForegroundColor Red
-        Write-Host "[mosaic] Re-run the installer."
-        exit 1
-    }
-}
-
-function Assert-Soul {
-    $soulPath = Join-Path $MosaicHome "SOUL.md"
-    if (-not (Test-Path $soulPath)) {
-        Write-Host "[mosaic] SOUL.md not found. Running mosaic init..."
-        & (Join-Path $MosaicHome "bin\mosaic-init.ps1")
-    }
-}
-
-function Assert-Runtime {
-    param([string]$Cmd)
-    if (-not (Get-Command $Cmd -ErrorAction SilentlyContinue)) {
-        Write-Host "[mosaic] ERROR: '$Cmd' not found in PATH." -ForegroundColor Red
-        Write-Host "[mosaic] Install $Cmd before launching."
-        exit 1
-    }
-}
-
-function Assert-SequentialThinking {
-    $checker = Join-Path $MosaicHome "bin\mosaic-ensure-sequential-thinking.ps1"
-    if (-not (Test-Path $checker)) {
-        Write-Host "[mosaic] ERROR: sequential-thinking checker missing: $checker" -ForegroundColor Red
-        exit 1
-    }
-    try {
-        & $checker -Check *>$null
-    }
-    catch {
-        Write-Host "[mosaic] ERROR: sequential-thinking MCP is required but not configured." -ForegroundColor Red
-        Write-Host "[mosaic] Run: $checker"
-        exit 1
-    }
-}
-
-function Get-ActiveMission {
-    $missionFile = Join-Path (Get-Location) ".mosaic\orchestrator\mission.json"
-    if (-not (Test-Path $missionFile)) {
-        return $null
-    }
-
-    try {
-        $mission = Get-Content $missionFile -Raw | ConvertFrom-Json
-    }
-    catch {
-        return $null
-    }
-
-    $status = [string]$mission.status
-    if ([string]::IsNullOrWhiteSpace($status)) {
-        $status = "inactive"
-    }
-    if ($status -ne "active" -and $status -ne "paused") {
-        return $null
-    }
-
-    $name = [string]$mission.name
-    if ([string]::IsNullOrWhiteSpace($name)) {
-        $name = "unnamed"
-    }
-
-    $id = [string]$mission.mission_id
-    if ([string]::IsNullOrWhiteSpace($id)) {
-        $id = ""
-    }
-
-    $milestones = @($mission.milestones)
-    $milestoneCount = $milestones.Count
-    $milestoneCompleted = @($milestones | Where-Object { $_.status -eq "completed" }).Count
-
-    return [PSCustomObject]@{
-        Name = $name
-        Id = $id
-        Status = $status
-        MilestoneCount = $milestoneCount
-        MilestoneCompleted = $milestoneCompleted
-    }
-}
-
-function Get-MissionContractBlock {
-    $mission = Get-ActiveMission
-    if ($null -eq $mission) {
-        return ""
-    }
-
-    return @"
-# ACTIVE MISSION — HARD GATE (Read Before Anything Else)
-
-An active orchestration mission exists in this project. This is a BLOCKING requirement.
-
-**Mission:** $($mission.Name)
-**ID:** $($mission.Id)
-**Status:** $($mission.Status)
-**Milestones:** $($mission.MilestoneCompleted) / $($mission.MilestoneCount) completed
-
-## MANDATORY — Before ANY Response to the User
-
-You MUST complete these steps before responding to any user message, including simple greetings:
-
-1. Read `~/.config/mosaic/guides/ORCHESTRATOR-PROTOCOL.md` (mission lifecycle protocol)
-2. Read `docs/MISSION-MANIFEST.md` for full mission scope, milestones, and success criteria
-3. Read the latest scratchpad in `docs/scratchpads/` for session history, decisions, and corrections
-4. Read `docs/TASKS.md` for current task state (what is done, what is next)
-5. After reading all four, acknowledge the mission state to the user before proceeding
-
-If the user gives a task, execute it within the mission context. If no task is given, present mission status and ask how to proceed.
-"@
-}
-
-function Get-MissionPrompt {
-    $mission = Get-ActiveMission
-    if ($null -eq $mission) {
-        return ""
-    }
-    return "Active mission detected: $($mission.Name). Read the mission state files and report status."
-}
-
-function Get-RuntimePrompt {
-    param(
-        [ValidateSet("claude", "codex", "opencode")]
-        [string]$Runtime
-    )
-
-    $runtimeFile = switch ($Runtime) {
-        "claude" { Join-Path $MosaicHome "runtime\claude\RUNTIME.md" }
-        "codex" { Join-Path $MosaicHome "runtime\codex\RUNTIME.md" }
-        "opencode" { Join-Path $MosaicHome "runtime\opencode\RUNTIME.md" }
-    }
-
-    if (-not (Test-Path $runtimeFile)) {
-        Write-Host "[mosaic] ERROR: runtime contract not found: $runtimeFile" -ForegroundColor Red
-        exit 1
-    }
-
-    $launcherContract = @'
-# Mosaic Launcher Runtime Contract (Hard Gate)
-
-This contract is injected by `mosaic` launch and is mandatory.
-
-First assistant response MUST start with exactly one mode declaration line:
-1. Orchestration mission: `Now initiating Orchestrator mode...`
-2. Implementation mission: `Now initiating Delivery mode...`
-3. Review-only mission: `Now initiating Review mode...`
-
-No tool call or implementation step may occur before that first line.
-
-Mosaic hard gates OVERRIDE runtime-default caution for routine delivery operations.
-For required push/merge/issue-close/release actions, execute without routine confirmation prompts.
-
-'@
-
-    $missionBlock = Get-MissionContractBlock
-    $agentsContent = Get-Content (Join-Path $MosaicHome "AGENTS.md") -Raw
-    $runtimeContent = Get-Content $runtimeFile -Raw
-
-    if (-not [string]::IsNullOrWhiteSpace($missionBlock)) {
-        return "$missionBlock`n`n$launcherContract`n$agentsContent`n`n# Runtime-Specific Contract`n`n$runtimeContent"
-    }
-
-    return "$launcherContract`n$agentsContent`n`n# Runtime-Specific Contract`n`n$runtimeContent"
-}
-
-function Ensure-RuntimeConfig {
-    param(
-        [ValidateSet("claude", "codex", "opencode")]
-        [string]$Runtime,
-        [string]$Dst
-    )
-
-    $parent = Split-Path $Dst -Parent
-    if (-not (Test-Path $parent)) { New-Item -ItemType Directory -Path $parent -Force | Out-Null }
-
-    $runtimePrompt = Get-RuntimePrompt -Runtime $Runtime
-    $tmp = [System.IO.Path]::GetTempFileName()
-    Set-Content -Path $tmp -Value $runtimePrompt -Encoding UTF8 -NoNewline
-
-    $srcHash = (Get-FileHash $tmp -Algorithm SHA256).Hash
-    $dstHash = if (Test-Path $Dst) { (Get-FileHash $Dst -Algorithm SHA256).Hash } else { "" }
-    if ($srcHash -ne $dstHash) {
-        Copy-Item $tmp $Dst -Force
-        Remove-Item $tmp -Force
-    }
-    else {
-        Remove-Item $tmp -Force
-    }
-}
-
-function Invoke-Yolo {
-    param([string[]]$YoloArgs)
-
-    if ($YoloArgs.Count -lt 1) {
-        Write-Host "[mosaic] ERROR: yolo requires a runtime (claude|codex|opencode)." -ForegroundColor Red
-        Write-Host "[mosaic] Example: mosaic yolo claude"
-        exit 1
-    }
-
-    $runtime = $YoloArgs[0]
-    $tail = if ($YoloArgs.Count -gt 1) { @($YoloArgs[1..($YoloArgs.Count - 1)]) } else { @() }
-
-    switch ($runtime) {
-        "claude" {
-            Assert-MosaicHome
-            Assert-AgentsMd
-            Assert-Soul
-            Assert-Runtime "claude"
-            Assert-SequentialThinking
-            $agentsContent = Get-RuntimePrompt -Runtime "claude"
-            Write-Host "[mosaic] Launching Claude Code in YOLO mode (dangerous permissions enabled)..."
-            & claude --dangerously-skip-permissions --append-system-prompt $agentsContent @tail
-            return
-        }
-        "codex" {
-            Assert-MosaicHome
-            Assert-AgentsMd
-            Assert-Soul
-            Assert-Runtime "codex"
-            Assert-SequentialThinking
-            Ensure-RuntimeConfig -Runtime "codex" -Dst (Join-Path $env:USERPROFILE ".codex\instructions.md")
-            $missionPrompt = Get-MissionPrompt
-            if (-not [string]::IsNullOrWhiteSpace($missionPrompt) -and $tail.Count -eq 0) {
-                Write-Host "[mosaic] Launching Codex in YOLO mode (active mission detected)..."
-                & codex --dangerously-bypass-approvals-and-sandbox $missionPrompt
-            }
-            else {
-                Write-Host "[mosaic] Launching Codex in YOLO mode (dangerous permissions enabled)..."
-                & codex --dangerously-bypass-approvals-and-sandbox @tail
-            }
-            return
-        }
-        "opencode" {
-            Assert-MosaicHome
-            Assert-AgentsMd
-            Assert-Soul
-            Assert-Runtime "opencode"
-            Assert-SequentialThinking
-            Ensure-RuntimeConfig -Runtime "opencode" -Dst (Join-Path $env:USERPROFILE ".config\opencode\AGENTS.md")
-            Write-Host "[mosaic] Launching OpenCode in YOLO mode..."
-            & opencode @tail
-            return
-        }
-        default {
-            Write-Host "[mosaic] ERROR: Unsupported yolo runtime '$runtime'. Use claude|codex|opencode." -ForegroundColor Red
-            exit 1
-        }
-    }
-}
-
-if ($args.Count -eq 0) {
-    Show-Usage
-    exit 0
-}
-
-$command = $args[0]
-$remaining = if ($args.Count -gt 1) { @($args[1..($args.Count - 1)]) } else { @() }
-
-switch ($command) {
-    "claude" {
-        Assert-MosaicHome
-        Assert-AgentsMd
-        Assert-Soul
-        Assert-Runtime "claude"
-        Assert-SequentialThinking
-        # Claude supports --append-system-prompt for direct injection
-        $agentsContent = Get-RuntimePrompt -Runtime "claude"
-        Write-Host "[mosaic] Launching Claude Code..."
-        & claude --append-system-prompt $agentsContent @remaining
-    }
-    "opencode" {
-        Assert-MosaicHome
-        Assert-AgentsMd
-        Assert-Soul
-        Assert-Runtime "opencode"
-        Assert-SequentialThinking
-        # OpenCode reads from ~/.config/opencode/AGENTS.md
-        Ensure-RuntimeConfig -Runtime "opencode" -Dst (Join-Path $env:USERPROFILE ".config\opencode\AGENTS.md")
-        Write-Host "[mosaic] Launching OpenCode..."
-        & opencode @remaining
-    }
-    "codex" {
-        Assert-MosaicHome
-        Assert-AgentsMd
-        Assert-Soul
-        Assert-Runtime "codex"
-        Assert-SequentialThinking
-        # Codex reads from ~/.codex/instructions.md
-        Ensure-RuntimeConfig -Runtime "codex" -Dst (Join-Path $env:USERPROFILE ".codex\instructions.md")
-        $missionPrompt = Get-MissionPrompt
-        if (-not [string]::IsNullOrWhiteSpace($missionPrompt) -and $remaining.Count -eq 0) {
-            Write-Host "[mosaic] Launching Codex (active mission detected)..."
-            & codex $missionPrompt
-        }
-        else {
-            Write-Host "[mosaic] Launching Codex..."
-            & codex @remaining
-        }
-    }
-    "yolo" {
-        Invoke-Yolo -YoloArgs $remaining
-    }
-    "--yolo" {
-        Invoke-Yolo -YoloArgs $remaining
-    }
-    "init" {
-        Assert-MosaicHome
-        & (Join-Path $MosaicHome "bin\mosaic-init.ps1") @remaining
-    }
-    "doctor" {
-        Assert-MosaicHome
-        & (Join-Path $MosaicHome "bin\mosaic-doctor.ps1") @remaining
-    }
-    "sync" {
-        Assert-MosaicHome
-        & (Join-Path $MosaicHome "bin\mosaic-sync-skills.ps1") @remaining
-    }
-    "bootstrap" {
-        Assert-MosaicHome
-        Write-Host "[mosaic] NOTE: mosaic-bootstrap-repo requires bash. Use Git Bash or WSL." -ForegroundColor Yellow
-        & (Join-Path $MosaicHome "bin\mosaic-bootstrap-repo") @remaining
-    }
-    "upgrade" {
-        Assert-MosaicHome
-        if ($remaining.Count -eq 0) {
-            & (Join-Path $MosaicHome "bin\mosaic-release-upgrade.ps1")
-            break
-        }
-
-        $mode = $remaining[0]
-        $tail = if ($remaining.Count -gt 1) { $remaining[1..($remaining.Count - 1)] } else { @() }
-
-        switch -Regex ($mode) {
-            "^release$" {
-                & (Join-Path $MosaicHome "bin\mosaic-release-upgrade.ps1") @tail
-            }
-            "^check$" {
-                & (Join-Path $MosaicHome "bin\mosaic-release-upgrade.ps1") -DryRun @tail
-            }
-            "^project$" {
-                Write-Host "[mosaic] NOTE: mosaic-upgrade requires bash. Use Git Bash or WSL." -ForegroundColor Yellow
-                & (Join-Path $MosaicHome "bin\mosaic-upgrade") @tail
-            }
-            "^(--all|--root)$" {
-                Write-Host "[mosaic] NOTE: mosaic-upgrade requires bash. Use Git Bash or WSL." -ForegroundColor Yellow
-                & (Join-Path $MosaicHome "bin\mosaic-upgrade") @remaining
-            }
-            "^(--dry-run|--ref|--keep|--overwrite|-y|--yes)$" {
-                & (Join-Path $MosaicHome "bin\mosaic-release-upgrade.ps1") @remaining
-            }
-            "^-.*" {
-                & (Join-Path $MosaicHome "bin\mosaic-release-upgrade.ps1") @remaining
-            }
-            default {
-                Write-Host "[mosaic] NOTE: treating positional argument as project path." -ForegroundColor Yellow
-                Write-Host "[mosaic] NOTE: mosaic-upgrade requires bash. Use Git Bash or WSL." -ForegroundColor Yellow
-                & (Join-Path $MosaicHome "bin\mosaic-upgrade") @remaining
-            }
-        }
-    }
-    "release-upgrade" {
-        Assert-MosaicHome
-        & (Join-Path $MosaicHome "bin\mosaic-release-upgrade.ps1") @remaining
-    }
-    "project-upgrade" {
-        Assert-MosaicHome
-        Write-Host "[mosaic] NOTE: mosaic-upgrade requires bash. Use Git Bash or WSL." -ForegroundColor Yellow
-        & (Join-Path $MosaicHome "bin\mosaic-upgrade") @remaining
-    }
-    { $_ -in "help", "-h", "--help" } { Show-Usage }
-    { $_ -in "version", "-v", "--version" } { Write-Host "mosaic $Version" }
-    default {
-        Write-Host "[mosaic] Unknown command: $command" -ForegroundColor Red
-        Write-Host "[mosaic] Run 'mosaic --help' for usage."
-        exit 1
-    }
-}

packages/mosaic/framework/install.sh

@@ -1,12 +1,32 @@
 #!/usr/bin/env bash
 set -euo pipefail
 
+# ─── Mosaic Framework Installer ──────────────────────────────────────────────
+#
+# Installs/upgrades the framework DATA to ~/.config/mosaic/.
+# No executables are placed on PATH — the mosaic npm CLI is the only binary.
+#
+# Called by tools/install.sh (the unified installer). Can also be run directly.
+#
+# Environment:
+#   MOSAIC_HOME              — target directory (default: ~/.config/mosaic)
+#   MOSAIC_INSTALL_MODE      — prompt|keep|overwrite (default: prompt)
+#   MOSAIC_ALLOW_MISSING_SEQUENTIAL_THINKING — 1 to bypass MCP check
+#   MOSAIC_SKIP_SKILLS_SYNC  — 1 to skip skill sync
+# ──────────────────────────────────────────────────────────────────────────────
+
 SOURCE_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
 TARGET_DIR="${MOSAIC_HOME:-$HOME/.config/mosaic}"
-INSTALL_MODE="${MOSAIC_INSTALL_MODE:-prompt}" # prompt|keep|overwrite
+INSTALL_MODE="${MOSAIC_INSTALL_MODE:-prompt}"
-PRESERVE_PATHS=("SOUL.md" "USER.md" "TOOLS.md" "memory")
 
-# Colors (disabled if not a terminal)
+# Files preserved across upgrades (never overwritten)
+PRESERVE_PATHS=("SOUL.md" "USER.md" "TOOLS.md" "memory" "sources")
+
+# Current framework schema version — bump this when the layout changes.
+# The migration system uses this to run upgrade steps.
+FRAMEWORK_VERSION=2
+
+# ─── colours ──────────────────────────────────────────────────────────────────
 if [[ -t 1 ]]; then
   GREEN='\033[0;32m' YELLOW='\033[0;33m' RED='\033[0;31m'
   CYAN='\033[0;36m' BOLD='\033[1m' RESET='\033[0m'
@@ -19,9 +39,29 @@ warn() { echo -e "  ${YELLOW}⚠${RESET} $1" >&2; }
 fail() { echo -e "  ${RED}✗${RESET} $1" >&2; }
 step() { echo -e "\n${BOLD}$1${RESET}"; }
 
+# ─── helpers ──────────────────────────────────────────────────────────────────
+
 is_existing_install() {
   [[ -d "$TARGET_DIR" ]] || return 1
-  [[ -f "$TARGET_DIR/bin/mosaic" || -f "$TARGET_DIR/AGENTS.md" || -f "$TARGET_DIR/SOUL.md" ]]
+  [[ -f "$TARGET_DIR/AGENTS.md" || -f "$TARGET_DIR/SOUL.md" ]]
+}
+
+installed_framework_version() {
+  local vf="$TARGET_DIR/.framework-version"
+  if [[ -f "$vf" ]]; then
+    cat "$vf" 2>/dev/null || echo "0"
+  else
+    # No version file = legacy install (version 0 or 1)
+    if [[ -d "$TARGET_DIR/bin" ]]; then
+      echo "1"   # Has bin/ → pre-migration legacy
+    else
+      echo "0"   # Fresh or unknown
+    fi
+  fi
+}
+
+write_framework_version() {
+  echo "$FRAMEWORK_VERSION" > "$TARGET_DIR/.framework-version"
 }
 
 select_install_mode() {
@@ -39,33 +79,22 @@ select_install_mode() {
   fi
 
   case "$INSTALL_MODE" in
-    keep|overwrite)
+    keep|overwrite) ;;
-      ;;
     prompt)
       if [[ -t 0 ]]; then
         echo ""
         echo "Existing Mosaic install detected at: $TARGET_DIR"
-        echo "Choose reinstall mode:"
+        echo "  1) keep      Update framework, preserve local files (SOUL.md, USER.md, etc.)"
-        echo "  1) keep      Keep local files (SOUL.md, USER.md, TOOLS.md, memory/) while updating framework"
+        echo "  2) overwrite Replace everything"
-        echo "  2) overwrite Replace everything in $TARGET_DIR"
+        echo "  3) cancel    Abort"
-        echo "  3) cancel    Abort install"
         printf "Selection [1/2/3] (default: 1): "
         read -r selection
-
         case "${selection:-1}" in
-          1|k|K|keep|KEEP) INSTALL_MODE="keep" ;;
+          1|k|K|keep) INSTALL_MODE="keep" ;;
-          2|o|O|overwrite|OVERWRITE) INSTALL_MODE="overwrite" ;;
+          2|o|O|overwrite) INSTALL_MODE="overwrite" ;;
-          3|c|C|cancel|CANCEL|n|N|no|NO)
+          *) fail "Install cancelled."; exit 1 ;;
-            fail "Install cancelled."
-            exit 1
-            ;;
-          *)
-            warn "Unrecognized selection '$selection'; defaulting to keep."
-            INSTALL_MODE="keep"
-            ;;
         esac
       else
-        warn "Existing install detected without interactive input; defaulting to keep local files."
         INSTALL_MODE="keep"
       fi
       ;;
@@ -83,10 +112,9 @@ sync_framework() {
   fi
 
   if command -v rsync >/dev/null 2>&1; then
-    local rsync_args=(-a --delete --exclude ".git")
+    local rsync_args=(-a --delete --exclude ".git" --exclude ".framework-version")
 
     if [[ "$INSTALL_MODE" == "keep" ]]; then
-      local path
       for path in "${PRESERVE_PATHS[@]}"; do
         rsync_args+=(--exclude "$path")
       done
@@ -96,10 +124,10 @@ sync_framework() {
     return
   fi
 
+  # Fallback: cp-based sync
   local preserve_tmp=""
   if [[ "$INSTALL_MODE" == "keep" ]]; then
     preserve_tmp="$(mktemp -d "${TMPDIR:-/tmp}/mosaic-preserve-XXXXXX")"
-    local path
     for path in "${PRESERVE_PATHS[@]}"; do
       if [[ -e "$TARGET_DIR/$path" ]]; then
         mkdir -p "$preserve_tmp/$(dirname "$path")"
@@ -108,12 +136,11 @@ sync_framework() {
     done
   fi
 
-  find "$TARGET_DIR" -mindepth 1 -maxdepth 1 ! -name ".git" -exec rm -rf {} +
+  find "$TARGET_DIR" -mindepth 1 -maxdepth 1 ! -name ".git" ! -name ".framework-version" -exec rm -rf {} +
   cp -R "$SOURCE_DIR"/. "$TARGET_DIR"/
   rm -rf "$TARGET_DIR/.git"
 
   if [[ -n "$preserve_tmp" ]]; then
-    local path
     for path in "${PRESERVE_PATHS[@]}"; do
       if [[ -e "$preserve_tmp/$path" ]]; then
         rm -rf "$TARGET_DIR/$path"
@@ -125,136 +152,133 @@ sync_framework() {
   fi
 }
 
+# ═══════════════════════════════════════════════════════════════════════════════
+# Migrations — run sequentially from the installed version to FRAMEWORK_VERSION
+# ═══════════════════════════════════════════════════════════════════════════════
+
+run_migrations() {
+  local from_version
+  from_version="$(installed_framework_version)"
+
+  if [[ "$from_version" -ge "$FRAMEWORK_VERSION" ]]; then
+    return  # Already current
+  fi
+
+  step "Running migrations (v${from_version} → v${FRAMEWORK_VERSION})"
+
+  # ── Migration: v0/v1 → v2 ─────────────────────────────────────────────────
+  # Remove bin/ directory — all executables now live in the npm CLI.
+  # Scripts that were in bin/ are now in tools/_scripts/.
+  if [[ "$from_version" -lt 2 ]]; then
+    if [[ -d "$TARGET_DIR/bin" ]]; then
+      ok "Removing legacy bin/ directory (executables now in npm CLI)"
+      rm -rf "$TARGET_DIR/bin"
+    fi
+
+    # Remove old mosaic PATH entry from shell profiles
+    for profile in "$HOME/.bashrc" "$HOME/.zshrc" "$HOME/.profile"; do
+      if [[ -f "$profile" ]] && grep -qF "$TARGET_DIR/bin" "$profile"; then
+        # Remove the PATH line and the comment above it
+        sed -i.mosaic-migration-bak \
+          -e "\|# Mosaic agent framework|d" \
+          -e "\|$TARGET_DIR/bin|d" \
+          "$profile"
+        ok "Cleaned up old PATH entry from $(basename "$profile")"
+        rm -f "${profile}.mosaic-migration-bak"
+      fi
+    done
+
+    # Remove stale rails/ symlink
+    if [[ -L "$TARGET_DIR/rails" ]]; then
+      rm -f "$TARGET_DIR/rails"
+    fi
+  fi
+
+  # ── Future migrations go here ──────────────────────────────────────────────
+  # if [[ "$from_version" -lt 3 ]]; then
+  #   ...
+  # fi
+}
+
+# ═══════════════════════════════════════════════════════════════════════════════
+# Main
+# ═══════════════════════════════════════════════════════════════════════════════
+
 step "Installing Mosaic framework"
 
 mkdir -p "$TARGET_DIR"
 select_install_mode
 
 if [[ "$INSTALL_MODE" == "keep" ]]; then
-  ok "Install mode: keep local SOUL.md/USER.md/TOOLS.md/memory while updating framework"
+  ok "Install mode: keep local files (SOUL.md, USER.md, TOOLS.md, memory/)"
 else
-  ok "Install mode: overwrite existing files"
+  ok "Install mode: overwrite"
 fi
 
 sync_framework
 
-# Ensure memory directory exists (preserved across upgrades, may not exist on fresh install)
+# Ensure memory directory exists
 mkdir -p "$TARGET_DIR/memory"
 
-chmod +x "$TARGET_DIR"/bin/*
-chmod +x "$TARGET_DIR"/install.sh
-
 # Ensure tool scripts are executable
 find "$TARGET_DIR/tools" -name "*.sh" -exec chmod +x {} + 2>/dev/null || true
+find "$TARGET_DIR/tools/_scripts" -type f -exec chmod +x {} + 2>/dev/null || true
 
-# Create backward-compat symlink: rails/ → tools/
+ok "Framework synced to $TARGET_DIR"
-if [[ -d "$TARGET_DIR/tools" ]]; then
-  if [[ -d "$TARGET_DIR/rails" ]] && [[ ! -L "$TARGET_DIR/rails" ]]; then
-    rm -rf "$TARGET_DIR/rails"
-  fi
-  ln -sfn "tools" "$TARGET_DIR/rails"
-fi
 
-ok "Framework installed to $TARGET_DIR"
+# Run migrations before post-install (migrations may remove old bin/ etc.)
+run_migrations
 
 step "Post-install tasks"
 
-if "$TARGET_DIR/bin/mosaic-link-runtime-assets" >/dev/null 2>&1; then
+SCRIPTS="$TARGET_DIR/tools/_scripts"
+
+if [[ -x "$SCRIPTS/mosaic-link-runtime-assets" ]]; then
+  if "$SCRIPTS/mosaic-link-runtime-assets" >/dev/null 2>&1; then
     ok "Runtime assets linked"
-else
+  else
     warn "Runtime asset linking failed (non-fatal)"
+  fi
 fi
 
-if "$TARGET_DIR/bin/mosaic-ensure-sequential-thinking" >/dev/null 2>&1; then
+if [[ -x "$SCRIPTS/mosaic-ensure-sequential-thinking" ]]; then
+  if "$SCRIPTS/mosaic-ensure-sequential-thinking" >/dev/null 2>&1; then
     ok "sequential-thinking MCP configured"
-else
+  else
     if [[ "${MOSAIC_ALLOW_MISSING_SEQUENTIAL_THINKING:-0}" == "1" ]]; then
-    warn "sequential-thinking MCP setup failed but bypassed (MOSAIC_ALLOW_MISSING_SEQUENTIAL_THINKING=1)"
+      warn "sequential-thinking MCP setup bypassed (MOSAIC_ALLOW_MISSING_SEQUENTIAL_THINKING=1)"
     else
       fail "sequential-thinking MCP setup failed (hard requirement)."
-    fail "Set MOSAIC_ALLOW_MISSING_SEQUENTIAL_THINKING=1 only for temporary bypass scenarios."
       exit 1
     fi
-fi
-
-if "$TARGET_DIR/bin/mosaic-ensure-excalidraw" >/dev/null 2>&1; then
-  ok "excalidraw MCP configured"
-else
-  warn "excalidraw MCP setup failed (non-fatal) — run 'mosaic-ensure-excalidraw' to retry"
-fi
-
-if [[ "${MOSAIC_SKIP_SKILLS_SYNC:-0}" == "1" ]]; then
-  ok "Skills sync skipped (MOSAIC_SKIP_SKILLS_SYNC=1)"
-else
-  if "$TARGET_DIR/bin/mosaic-sync-skills" >/dev/null 2>&1; then
-    ok "Skills synced"
-  else
-    warn "Skills sync failed (non-fatal)"
   fi
 fi
 
-if "$TARGET_DIR/bin/mosaic-migrate-local-skills" --apply >/dev/null 2>&1; then
+if [[ -x "$SCRIPTS/mosaic-ensure-excalidraw" ]]; then
-  ok "Local skills migrated"
+  "$SCRIPTS/mosaic-ensure-excalidraw" >/dev/null 2>&1 && ok "excalidraw MCP configured" || warn "excalidraw MCP setup failed (non-fatal)"
-else
-  warn "Local skill migration failed (non-fatal)"
 fi
 
-if "$TARGET_DIR/bin/mosaic-doctor" >/dev/null 2>&1; then
+if [[ "${MOSAIC_SKIP_SKILLS_SYNC:-0}" != "1" ]] && [[ -x "$SCRIPTS/mosaic-sync-skills" ]]; then
-  ok "Health audit passed"
+  "$SCRIPTS/mosaic-sync-skills" >/dev/null 2>&1 && ok "Skills synced" || warn "Skills sync failed (non-fatal)"
-else
-  warn "Health audit reported issues — run 'mosaic doctor' for details"
 fi
 
-step "PATH configuration"
+if [[ -x "$SCRIPTS/mosaic-migrate-local-skills" ]]; then
-
+  "$SCRIPTS/mosaic-migrate-local-skills" --apply >/dev/null 2>&1 && ok "Local skills migrated" || warn "Local skill migration failed (non-fatal)"
-PATH_LINE="export PATH=\"$TARGET_DIR/bin:\$PATH\""
-
-# Find the right shell profile
-if [[ -n "${ZSH_VERSION:-}" ]] || [[ "$(basename "${SHELL:-}")" == "zsh" ]]; then
-  SHELL_PROFILE="$HOME/.zshrc"
-elif [[ -f "$HOME/.bashrc" ]]; then
-  SHELL_PROFILE="$HOME/.bashrc"
-elif [[ -f "$HOME/.profile" ]]; then
-  SHELL_PROFILE="$HOME/.profile"
-else
-  SHELL_PROFILE="$HOME/.profile"
 fi
 
-PATH_CHANGED=false
+if [[ -x "$SCRIPTS/mosaic-doctor" ]]; then
-if grep -qF "$TARGET_DIR/bin" "$SHELL_PROFILE" 2>/dev/null; then
+  "$SCRIPTS/mosaic-doctor" >/dev/null 2>&1 && ok "Health audit passed" || warn "Health audit reported issues — run 'mosaic doctor' for details"
-  ok "Already in PATH via $SHELL_PROFILE"
-else
-  {
-    echo ""
-    echo "# Mosaic agent framework"
-    echo "$PATH_LINE"
-  } >> "$SHELL_PROFILE"
-  ok "Added to PATH in $SHELL_PROFILE"
-  PATH_CHANGED=true
 fi
 
+# Write version stamp AFTER everything succeeds
+write_framework_version
+
 # ── Summary ──────────────────────────────────────────────────
 echo ""
-echo -e "${GREEN}${BOLD}  Mosaic installed successfully.${RESET}"
+echo -e "${GREEN}${BOLD}  Mosaic framework installed.${RESET}"
 echo ""
 
-# Collect next steps
-NEXT_STEPS=()
-
-if [[ "$PATH_CHANGED" == "true" ]]; then
-  NEXT_STEPS+=("Run ${CYAN}source $SHELL_PROFILE${RESET} or log out and back in to activate PATH.")
-fi
-
 if [[ ! -f "$TARGET_DIR/SOUL.md" ]]; then
-  NEXT_STEPS+=("Run ${CYAN}mosaic init${RESET} to set up your agent identity (SOUL.md), user profile (USER.md), and tool config (TOOLS.md).")
+  echo -e "  Run ${CYAN}mosaic init${RESET} to set up your agent identity."
-elif grep -q "not configured" "$TARGET_DIR/USER.md" 2>/dev/null; then
-  NEXT_STEPS+=("Run ${CYAN}mosaic init${RESET} to personalize your user profile (USER.md) and tool config (TOOLS.md).")
-fi
-
-if [[ ${#NEXT_STEPS[@]} -gt 0 ]]; then
-  echo -e "  ${BOLD}Next steps:${RESET}"
-  for i in "${!NEXT_STEPS[@]}"; do
-    echo -e "  $((i+1)). ${NEXT_STEPS[$i]}"
-  done
   echo ""
 fi

packages/mosaic/framework/templates/repo/scripts/agent/orchestrator-daemon.sh

@@ -69,12 +69,12 @@ case "$cmd" in
       echo "[agent-framework] orchestrator already running (pid=$(cat "$PID_FILE"))"
       exit 0
     fi
-    nohup "$MOSAIC_HOME/bin/mosaic-orchestrator-drain" --poll-sec "$poll_sec" $sync_arg >"$LOG_FILE" 2>&1 &
+    nohup "$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-drain" --poll-sec "$poll_sec" $sync_arg >"$LOG_FILE" 2>&1 &
     echo "$!" > "$PID_FILE"
     echo "[agent-framework] orchestrator started (pid=$!, log=$LOG_FILE)"
     ;;
   drain)
-    exec "$MOSAIC_HOME/bin/mosaic-orchestrator-drain" --poll-sec "$poll_sec" $sync_arg
+    exec "$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-drain" --poll-sec "$poll_sec" $sync_arg
     ;;
   stop)
     if ! is_running; then

packages/mosaic/framework/tools/_scripts/mosaic-bootstrap-repo

@@ -113,8 +113,8 @@ echo "[mosaic] Optional: run orchestrator rail via ~/.config/mosaic/bin/mosaic-o
 echo "[mosaic] Optional: run detached orchestrator via bash $TARGET_DIR/scripts/agent/orchestrator-daemon.sh start"
 
 if [[ -n "$QUALITY_TEMPLATE" ]]; then
-  if [[ -x "$MOSAIC_HOME/bin/mosaic-quality-apply" ]]; then
+  if [[ -x "$MOSAIC_HOME/tools/_scripts/mosaic-quality-apply" ]]; then
-    "$MOSAIC_HOME/bin/mosaic-quality-apply" --template "$QUALITY_TEMPLATE" --target "$TARGET_DIR"
+    "$MOSAIC_HOME/tools/_scripts/mosaic-quality-apply" --template "$QUALITY_TEMPLATE" --target "$TARGET_DIR"
     if [[ -f "$TARGET_DIR/.mosaic/quality-rails.yml" ]]; then
       sed -i "s/^enabled:.*/enabled: true/" "$TARGET_DIR/.mosaic/quality-rails.yml"
       sed -i "s/^template:.*/template: \"$QUALITY_TEMPLATE\"/" "$TARGET_DIR/.mosaic/quality-rails.yml"

packages/mosaic/framework/tools/_scripts/mosaic-doctor

@@ -165,18 +165,18 @@ expect_dir "$MOSAIC_HOME/profiles"
 expect_dir "$MOSAIC_HOME/templates/agent"
 expect_dir "$MOSAIC_HOME/skills"
 expect_dir "$MOSAIC_HOME/skills-local"
-expect_file "$MOSAIC_HOME/bin/mosaic-link-runtime-assets"
+expect_file "$MOSAIC_HOME/tools/_scripts/mosaic-link-runtime-assets"
-expect_file "$MOSAIC_HOME/bin/mosaic-ensure-sequential-thinking"
+expect_file "$MOSAIC_HOME/tools/_scripts/mosaic-ensure-sequential-thinking"
-expect_file "$MOSAIC_HOME/bin/mosaic-sync-skills"
+expect_file "$MOSAIC_HOME/tools/_scripts/mosaic-sync-skills"
-expect_file "$MOSAIC_HOME/bin/mosaic-projects"
+expect_file "$MOSAIC_HOME/tools/_scripts/mosaic-projects"
-expect_file "$MOSAIC_HOME/bin/mosaic-quality-apply"
+expect_file "$MOSAIC_HOME/tools/_scripts/mosaic-quality-apply"
-expect_file "$MOSAIC_HOME/bin/mosaic-quality-verify"
+expect_file "$MOSAIC_HOME/tools/_scripts/mosaic-quality-verify"
-expect_file "$MOSAIC_HOME/bin/mosaic-orchestrator-run"
+expect_file "$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-run"
-expect_file "$MOSAIC_HOME/bin/mosaic-orchestrator-sync-tasks"
+expect_file "$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-sync-tasks"
-expect_file "$MOSAIC_HOME/bin/mosaic-orchestrator-drain"
+expect_file "$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-drain"
-expect_file "$MOSAIC_HOME/bin/mosaic-orchestrator-matrix-publish"
+expect_file "$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-matrix-publish"
-expect_file "$MOSAIC_HOME/bin/mosaic-orchestrator-matrix-consume"
+expect_file "$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-matrix-consume"
-expect_file "$MOSAIC_HOME/bin/mosaic-orchestrator-matrix-cycle"
+expect_file "$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-matrix-cycle"
 expect_file "$MOSAIC_HOME/tools/git/ci-queue-wait.sh"
 expect_file "$MOSAIC_HOME/tools/git/pr-ci-wait.sh"
 expect_file "$MOSAIC_HOME/tools/orchestrator-matrix/transport/matrix_transport.py"
@@ -215,8 +215,8 @@ check_runtime_contract_file "$HOME/.config/opencode/AGENTS.md" "$MOSAIC_HOME/run
 check_runtime_contract_file "$HOME/.codex/instructions.md" "$MOSAIC_HOME/runtime/codex/instructions.md" "codex"
 
 # Sequential-thinking MCP hard requirement.
-if [[ -x "$MOSAIC_HOME/bin/mosaic-ensure-sequential-thinking" ]]; then
+if [[ -x "$MOSAIC_HOME/tools/_scripts/mosaic-ensure-sequential-thinking" ]]; then
-  if "$MOSAIC_HOME/bin/mosaic-ensure-sequential-thinking" --check >/dev/null 2>&1; then
+  if "$MOSAIC_HOME/tools/_scripts/mosaic-ensure-sequential-thinking" --check >/dev/null 2>&1; then
     pass "sequential-thinking MCP configured and available"
   else
     warn "sequential-thinking MCP missing or misconfigured"
@@ -422,8 +422,8 @@ with open('$pi_settings_file', 'w') as f:
   fi
 
   # 4. Run link-runtime-assets if available
-  if [[ -x "$MOSAIC_HOME/bin/mosaic-link-runtime-assets" ]]; then
+  if [[ -x "$MOSAIC_HOME/tools/_scripts/mosaic-link-runtime-assets" ]]; then
-    "$MOSAIC_HOME/bin/mosaic-link-runtime-assets" >/dev/null 2>&1 && fix "Re-ran mosaic-link-runtime-assets"
+    "$MOSAIC_HOME/tools/_scripts/mosaic-link-runtime-assets" >/dev/null 2>&1 && fix "Re-ran mosaic-link-runtime-assets"
   fi
 
   echo "[mosaic-doctor] fixes=$fix_count"

packages/mosaic/framework/tools/_scripts/mosaic-init

@@ -60,12 +60,14 @@ Options:
   --timezone <tz>          Your timezone (e.g., "America/Chicago")
   --non-interactive        Fail if any required value is missing (no prompts)
   --soul-only              Only generate SOUL.md
+  --force                  Overwrite existing files without prompting
   -h, --help               Show help
 USAGE
 }
 
 NON_INTERACTIVE=0
 SOUL_ONLY=0
+FORCE=0
 
 while [[ $# -gt 0 ]]; do
   case "$1" in
@@ -79,6 +81,7 @@ while [[ $# -gt 0 ]]; do
     --timezone) TIMEZONE="$2"; shift 2 ;;
     --non-interactive) NON_INTERACTIVE=1; shift ;;
     --soul-only) SOUL_ONLY=1; shift ;;
+    --force) FORCE=1; shift ;;
     -h|--help) usage; exit 0 ;;
     *) echo "Unknown argument: $1" >&2; usage >&2; exit 1 ;;
   esac
@@ -139,6 +142,134 @@ prompt_multiline() {
   eval "$var_name=\"$value\""
 }
 
+# ── Existing file detection ────────────────────────────────────
+
+detect_existing_config() {
+  local found=0
+  local existing_files=()
+
+  [[ -f "$SOUL_OUTPUT" ]] && { found=1; existing_files+=("SOUL.md"); }
+  [[ -f "$USER_OUTPUT" ]] && { found=1; existing_files+=("USER.md"); }
+  [[ -f "$TOOLS_OUTPUT" ]] && { found=1; existing_files+=("TOOLS.md"); }
+
+  if [[ $found -eq 0 || $FORCE -eq 1 ]]; then
+    return 0  # No existing files or --force: proceed with fresh install
+  fi
+
+  echo "[mosaic-init] Existing configuration detected:"
+  for f in "${existing_files[@]}"; do
+    echo "  ✓ $f"
+  done
+
+  # Show current agent name if SOUL.md exists
+  if [[ -f "$SOUL_OUTPUT" ]]; then
+    local current_name
+    current_name=$(grep -oP 'You are \*\*\K[^*]+' "$SOUL_OUTPUT" 2>/dev/null || true)
+    if [[ -n "$current_name" ]]; then
+      echo "  Agent: $current_name"
+    fi
+  fi
+  echo ""
+
+  if [[ $NON_INTERACTIVE -eq 1 ]]; then
+    echo "[mosaic-init] Existing config found. Use --force to overwrite in non-interactive mode."
+    exit 0
+  fi
+
+  echo "What would you like to do?"
+  echo "  1) keep       — Keep existing files, skip init (default)"
+  echo "  2) import     — Import values from existing files as defaults, then regenerate"
+  echo "  3) overwrite  — Start fresh, overwrite all files"
+  printf "Choose [1/2/3]: "
+  read -r choice
+
+  case "${choice:-1}" in
+    1|keep)
+      echo "[mosaic-init] Keeping existing configuration."
+      # Still push to runtime adapters in case framework was updated
+      if [[ -x "$MOSAIC_HOME/tools/_scripts/mosaic-link-runtime-assets" ]]; then
+        echo "[mosaic-init] Updating runtime adapters..."
+        "$MOSAIC_HOME/tools/_scripts/mosaic-link-runtime-assets"
+      fi
+      echo "[mosaic-init] Done. Launch with: mosaic claude"
+      exit 0
+      ;;
+    2|import)
+      echo "[mosaic-init] Importing values from existing files as defaults..."
+      import_existing_values
+      ;;
+    3|overwrite)
+      echo "[mosaic-init] Starting fresh install..."
+      # Back up existing files
+      local ts
+      ts=$(date +%Y%m%d%H%M%S)
+      for f in "${existing_files[@]}"; do
+        local src="$MOSAIC_HOME/$f"
+        if [[ -f "$src" ]]; then
+          cp "$src" "${src}.bak.${ts}"
+          echo "  Backed up $f → ${f}.bak.${ts}"
+        fi
+      done
+      ;;
+    *)
+      echo "[mosaic-init] Invalid choice. Keeping existing configuration."
+      exit 0
+      ;;
+  esac
+}
+
+import_existing_values() {
+  # Import SOUL.md values
+  if [[ -f "$SOUL_OUTPUT" ]]; then
+    local content
+    content=$(cat "$SOUL_OUTPUT")
+
+    if [[ -z "$AGENT_NAME" ]]; then
+      AGENT_NAME=$(echo "$content" | grep -oP 'You are \*\*\K[^*]+' 2>/dev/null || true)
+    fi
+    if [[ -z "$ROLE_DESCRIPTION" ]]; then
+      ROLE_DESCRIPTION=$(echo "$content" | grep -oP 'Role identity: \K.+' 2>/dev/null || true)
+    fi
+    if [[ -z "$STYLE" ]]; then
+      if echo "$content" | grep -q 'Be direct, concise'; then
+        STYLE="direct"
+      elif echo "$content" | grep -q 'Be warm and conversational'; then
+        STYLE="friendly"
+      elif echo "$content" | grep -q 'Use professional, structured'; then
+        STYLE="formal"
+      fi
+    fi
+  fi
+
+  # Import USER.md values
+  if [[ -f "$USER_OUTPUT" ]]; then
+    local content
+    content=$(cat "$USER_OUTPUT")
+
+    if [[ -z "$USER_NAME" ]]; then
+      USER_NAME=$(echo "$content" | grep -oP '\*\*Name:\*\* \K.+' 2>/dev/null || true)
+    fi
+    if [[ -z "$PRONOUNS" ]]; then
+      PRONOUNS=$(echo "$content" | grep -oP '\*\*Pronouns:\*\* \K.+' 2>/dev/null || true)
+    fi
+    if [[ -z "$TIMEZONE" ]]; then
+      TIMEZONE=$(echo "$content" | grep -oP '\*\*Timezone:\*\* \K.+' 2>/dev/null || true)
+    fi
+  fi
+
+  # Import TOOLS.md values
+  if [[ -f "$TOOLS_OUTPUT" ]]; then
+    local content
+    content=$(cat "$TOOLS_OUTPUT")
+
+    if [[ -z "$CREDENTIALS_LOCATION" ]]; then
+      CREDENTIALS_LOCATION=$(echo "$content" | grep -oP '\*\*Location:\*\* \K.+' 2>/dev/null || true)
+    fi
+  fi
+}
+
+detect_existing_config
+
 # ── SOUL.md Generation ────────────────────────────────────────
 echo "[mosaic-init] Generating SOUL.md — agent identity contract"
 echo ""
@@ -261,9 +392,9 @@ echo "[mosaic-init] Style: $STYLE"
 
 if [[ $SOUL_ONLY -eq 1 ]]; then
   # Push to runtime adapters and exit
-  if [[ -x "$MOSAIC_HOME/bin/mosaic-link-runtime-assets" ]]; then
+  if [[ -x "$MOSAIC_HOME/tools/_scripts/mosaic-link-runtime-assets" ]]; then
     echo "[mosaic-init] Updating runtime adapters..."
-    "$MOSAIC_HOME/bin/mosaic-link-runtime-assets"
+    "$MOSAIC_HOME/tools/_scripts/mosaic-link-runtime-assets"
   fi
   echo "[mosaic-init] Done. Launch with: mosaic claude"
   exit 0
@@ -413,10 +544,10 @@ fi
 # ── Finalize ──────────────────────────────────────────────────
 
 # Push to runtime adapters
-if [[ -x "$MOSAIC_HOME/bin/mosaic-link-runtime-assets" ]]; then
+if [[ -x "$MOSAIC_HOME/tools/_scripts/mosaic-link-runtime-assets" ]]; then
   echo ""
   echo "[mosaic-init] Updating runtime adapters..."
-  "$MOSAIC_HOME/bin/mosaic-link-runtime-assets"
+  "$MOSAIC_HOME/tools/_scripts/mosaic-link-runtime-assets"
 fi
 
 echo ""

packages/mosaic/framework/tools/_scripts/mosaic-link-runtime-assets

@@ -128,8 +128,8 @@ fi
 # Pi extension is loaded via --extension flag in the mosaic launcher.
 # Do NOT copy into ~/.pi/agent/extensions/ — that causes duplicate loading.
 
-if [[ -x "$MOSAIC_HOME/bin/mosaic-ensure-sequential-thinking" ]]; then
+if [[ -x "$MOSAIC_HOME/tools/_scripts/mosaic-ensure-sequential-thinking" ]]; then
-  "$MOSAIC_HOME/bin/mosaic-ensure-sequential-thinking"
+  "$MOSAIC_HOME/tools/_scripts/mosaic-ensure-sequential-thinking"
 fi
 
 echo "[mosaic-link] Runtime assets synced (non-symlink mode)"

packages/mosaic/framework/tools/_scripts/mosaic-orchestrator-drain

@@ -2,8 +2,8 @@
 set -euo pipefail
 
 MOSAIC_HOME="${MOSAIC_HOME:-$HOME/.config/mosaic}"
-sync_cmd="$MOSAIC_HOME/bin/mosaic-orchestrator-sync-tasks"
+sync_cmd="$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-sync-tasks"
-run_cmd="$MOSAIC_HOME/bin/mosaic-orchestrator-run"
+run_cmd="$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-run"
 
 do_sync=1
 poll_sec=15

packages/mosaic/framework/tools/_scripts/mosaic-orchestrator-matrix-cycle

@@ -3,9 +3,9 @@ set -euo pipefail
 
 MOSAIC_HOME="${MOSAIC_HOME:-$HOME/.config/mosaic}"
 
-consume="$MOSAIC_HOME/bin/mosaic-orchestrator-matrix-consume"
+consume="$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-matrix-consume"
-run="$MOSAIC_HOME/bin/mosaic-orchestrator-run"
+run="$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-run"
-publish="$MOSAIC_HOME/bin/mosaic-orchestrator-matrix-publish"
+publish="$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-matrix-publish"
 
 for cmd in "$consume" "$run" "$publish"; do
   if [[ ! -x "$cmd" ]]; then

packages/mosaic/framework/tools/_scripts/mosaic-projects

@@ -151,7 +151,7 @@ case "$cmd" in
       [[ -n "$quality_template" ]] && args+=(--quality-template "$quality_template")
       args+=("$repo")
       echo "[mosaic-projects] bootstrap: $repo"
-      "$MOSAIC_HOME/bin/mosaic-bootstrap-repo" "${args[@]}"
+      "$MOSAIC_HOME/tools/_scripts/mosaic-bootstrap-repo" "${args[@]}"
       add_repo "$repo" || true
     done
     ;;
@@ -193,7 +193,7 @@ case "$cmd" in
             drain)
               args=(--poll-sec "$poll_sec")
               [[ $no_sync -eq 1 ]] && args+=(--no-sync)
-              "$MOSAIC_HOME/bin/mosaic-orchestrator-drain" "${args[@]}"
+              "$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-drain" "${args[@]}"
               ;;
             status)
               echo "[mosaic-projects] no daemon script in repo; run from bootstrapped repo or re-bootstrap"

packages/mosaic/framework/tools/_scripts/mosaic-sync-skills

@@ -55,7 +55,26 @@ mkdir -p "$MOSAIC_HOME" "$MOSAIC_SKILLS_DIR" "$MOSAIC_LOCAL_SKILLS_DIR"
 if [[ $fetch -eq 1 ]]; then
   if [[ -d "$SKILLS_REPO_DIR/.git" ]]; then
     echo "[mosaic-skills] Updating skills source: $SKILLS_REPO_DIR"
-    git -C "$SKILLS_REPO_DIR" pull --rebase
+
+    # Stash any local changes (dirty index or worktree) before pulling
+    local_changes=0
+    if ! git -C "$SKILLS_REPO_DIR" diff --quiet 2>/dev/null || \
+       ! git -C "$SKILLS_REPO_DIR" diff --cached --quiet 2>/dev/null; then
+      local_changes=1
+      echo "[mosaic-skills] Stashing local changes..."
+      git -C "$SKILLS_REPO_DIR" stash push -q -m "mosaic-sync-skills auto-stash"
+    fi
+
+    if ! git -C "$SKILLS_REPO_DIR" pull --rebase; then
+      echo "[mosaic-skills] WARN: pull failed — continuing with existing checkout" >&2
+    fi
+
+    # Restore stashed changes
+    if [[ $local_changes -eq 1 ]]; then
+      echo "[mosaic-skills] Restoring local changes..."
+      git -C "$SKILLS_REPO_DIR" stash pop -q 2>/dev/null || \
+        echo "[mosaic-skills] WARN: stash pop had conflicts — check $SKILLS_REPO_DIR" >&2
+    fi
   else
     echo "[mosaic-skills] Cloning skills source to: $SKILLS_REPO_DIR"
     mkdir -p "$(dirname "$SKILLS_REPO_DIR")"

packages/mosaic/framework/tools/_scripts/mosaic-upgrade-slaves

@@ -2,7 +2,7 @@
 set -euo pipefail
 
 MOSAIC_HOME="${MOSAIC_HOME:-$HOME/.config/mosaic}"
-BOOTSTRAP_CMD="$MOSAIC_HOME/bin/mosaic-bootstrap-repo"
+BOOTSTRAP_CMD="$MOSAIC_HOME/tools/_scripts/mosaic-bootstrap-repo"
 
 roots=("$HOME/src")
 apply=0

packages/mosaic/framework/tools/orchestrator/session-run.sh

@@ -80,11 +80,11 @@ echo -e "${C_CYAN}Capsule:${C_RESET} $(next_task_capsule_path "$PROJECT")"
 
 cd "$PROJECT"
 if [[ "$YOLO" == true ]]; then
-  exec "$MOSAIC_HOME/bin/mosaic" yolo "$runtime" "$launch_prompt"
+  exec mosaic yolo "$runtime" "$launch_prompt"
 elif [[ "$runtime" == "claude" ]]; then
-  exec "$MOSAIC_HOME/bin/mosaic" claude "$launch_prompt"
+  exec mosaic claude "$launch_prompt"
 elif [[ "$runtime" == "codex" ]]; then
-  exec "$MOSAIC_HOME/bin/mosaic" codex "$launch_prompt"
+  exec mosaic codex "$launch_prompt"
 fi
 
 echo -e "${C_RED}Unsupported coord runtime: $runtime${C_RESET}" >&2

packages/mosaic/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/mosaic",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.4",
   "description": "Mosaic agent framework — installation wizard and meta package",
   "type": "module",
   "main": "dist/index.js",

packages/mosaic/src/constants.ts

@@ -1,7 +1,7 @@
 import { homedir } from 'node:os';
 import { join } from 'node:path';
 
-export const VERSION = '0.1.0';
+export const VERSION = '0.0.2';
 
 export const DEFAULT_MOSAIC_HOME = join(homedir(), '.config', 'mosaic');
 

packages/mosaic/src/platform/file-ops.ts

@@ -9,7 +9,7 @@ import {
   unlinkSync,
   statSync,
 } from 'node:fs';
-import { dirname, join, relative } from 'node:path';
+import { dirname, join, relative, resolve } from 'node:path';
 
 const MAX_BACKUPS = 3;
 
@@ -68,6 +68,9 @@ export function syncDirectory(
   target: string,
   options: { preserve?: string[]; excludeGit?: boolean } = {},
 ): void {
+  // Guard: source and target are the same directory — nothing to sync
+  if (resolve(source) === resolve(target)) return;
+
   const preserveSet = new Set(options.preserve ?? []);
 
   // Collect files from source
@@ -77,9 +80,10 @@ export function syncDirectory(
     const stat = statSync(src);
     if (stat.isDirectory()) {
       const relPath = relative(relBase, src);
+      const dirName = relPath.split('/').pop() ?? '';
 
-      // Skip .git
+      // Skip any .git directory (top-level or nested, e.g. sources/agent-skills/.git)
-      if (options.excludeGit && relPath === '.git') return;
+      if (options.excludeGit && (dirName === '.git' || relPath.includes('/.git'))) return;
 
       // Skip preserved paths at top level
       if (preserveSet.has(relPath) && existsSync(dest)) return;
@@ -91,6 +95,9 @@ export function syncDirectory(
     } else {
       const relPath = relative(relBase, src);
 
+      // Skip files inside .git directories
+      if (options.excludeGit && relPath.includes('/.git/')) return;
+
       // Skip preserved files at top level
       if (preserveSet.has(relPath) && existsSync(dest)) return;
 

packages/mosaic/src/stages/detect-install.ts

@@ -87,7 +87,9 @@ export async function detectInstallStage(
     ],
   });
 
-  if (state.installAction === 'keep') {
+  if (state.installAction === 'keep' || state.installAction === 'reconfigure') {
+    // Load existing values — for 'keep' they're final, for 'reconfigure'
+    // they become pre-populated defaults so the user can tweak them.
     state.soul = await config.readSoul();
     state.user = await config.readUser();
     state.tools = await config.readTools();

packages/mosaic/src/stages/soul-setup.ts

@@ -24,6 +24,18 @@ export async function soulSetupStage(p: WizardPrompter, state: WizardState): Pro
         return undefined;
       },
     });
+  } else if (state.installAction === 'reconfigure') {
+    // Show existing value as default so the user can accept or change it
+    state.soul.agentName = await p.text({
+      message: 'What name should agents use?',
+      placeholder: state.soul.agentName,
+      defaultValue: state.soul.agentName,
+      validate: (v) => {
+        if (v.length === 0) return 'Name cannot be empty';
+        if (v.length > 50) return 'Name must be under 50 characters';
+        return undefined;
+      },
+    });
   }
 
   if (state.mode === 'advanced') {
@@ -38,7 +50,7 @@ export async function soulSetupStage(p: WizardPrompter, state: WizardState): Pro
     state.soul.roleDescription ??= DEFAULTS.roleDescription;
   }
 
-  if (!state.soul.communicationStyle) {
+  if (!state.soul.communicationStyle || state.installAction === 'reconfigure') {
     state.soul.communicationStyle = await p.select<CommunicationStyle>({
       message: 'Communication style',
       options: [
@@ -46,7 +58,7 @@ export async function soulSetupStage(p: WizardPrompter, state: WizardState): Pro
         { value: 'friendly', label: 'Friendly', hint: 'Warm but efficient, conversational' },
         { value: 'formal', label: 'Formal', hint: 'Professional, structured, thorough' },
       ],
-      initialValue: 'direct',
+      initialValue: state.soul.communicationStyle ?? 'direct',
     });
   }
 

packages/prdy/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/prdy",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
   "exports": {

packages/quality-rails/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/quality-rails",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "type": "module",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",

packages/queue/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/queue",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
   "exports": {

packages/types/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/types",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
   "exports": {

packages/types/src/chat/events.ts

@@ -99,6 +99,11 @@ export interface SetThinkingPayload {
   level: string;
 }
 
+/** Client request to abort the current agent operation */
+export interface AbortPayload {
+  conversationId: string;
+}
+
 /** Socket.IO typed event map: server → client */
 export interface ServerToClientEvents {
   'message:ack': (payload: MessageAckPayload) => void;
@@ -120,4 +125,5 @@ export interface ClientToServerEvents {
   message: (data: ChatMessagePayload) => void;
   'set:thinking': (data: SetThinkingPayload) => void;
   'command:execute': (data: SlashCommandPayload) => void;
+  abort: (data: AbortPayload) => void;
 }

packages/types/src/chat/index.ts

@@ -11,6 +11,7 @@ export type {
   SessionInfoPayload,
   RoutingDecisionInfo,
   SetThinkingPayload,
+  AbortPayload,
   ErrorPayload,
   ChatMessagePayload,
   ServerToClientEvents,

plugins/discord/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/discord-plugin",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
   "exports": {

plugins/macp/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/oc-macp-plugin",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "type": "module",
   "main": "src/index.ts",
   "description": "OpenClaw ACP runtime backend that routes sessions_spawn(runtime:\"macp\") to the Pi MACP runner.",

plugins/mosaic-framework/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/oc-framework-plugin",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "type": "module",
   "main": "src/index.ts",
   "description": "Injects Mosaic framework rails, runtime contract, and active mission context into all OpenClaw agent sessions and ACP subagent spawns.",

plugins/telegram/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaic/telegram-plugin",
-  "version": "0.0.1-alpha.1",
+  "version": "0.0.2",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
   "exports": {

scratchpads/cli-tui-tools-enhancement.md

@@ -0,0 +1,66 @@
+# CLI/TUI Tools Enhancement Scratchpad
+
+## Objective
+
+Add 5 capability areas to the Mosaic CLI/TUI + gateway agent:
+
+1. Web search tools (multi-provider: Brave, DuckDuckGo, Tavily, SearXNG)
+2. File edit tool (`fs_edit_file` with targeted text replacement)
+3. MCP management TUI commands (`/mcp status`, `/mcp reconnect`, `/mcp servers`)
+4. File reference in chat (`@file` syntax + `/attach` command)
+5. Implement `/stop` to cancel streaming
+
+## Plan
+
+### 1. Web Search Tools (gateway agent tools)
+
+- Create `apps/gateway/src/agent/tools/search-tools.ts`
+- Providers: Brave Search API, DuckDuckGo (HTML scraping), Tavily API, SearXNG (self-hosted)
+- Each provider activated by env var (BRAVE_API_KEY, TAVILY_API_KEY, SEARXNG_URL)
+- Tools: `web_search` (unified), `web_search_news` (news-specific)
+- Export from `apps/gateway/src/agent/tools/index.ts`
+- Wire into `agent.service.ts` buildToolsForSandbox
+
+### 2. File Edit Tool (gateway agent tool)
+
+- Add `fs_edit_file` to `apps/gateway/src/agent/tools/file-tools.ts`
+- Parameters: path, edits[{oldText, newText}] — same semantics as pi's Edit tool
+- Validates uniqueness of each oldText, applies all edits atomically
+
+### 3. MCP Management Commands (TUI + gateway)
+
+- Add gateway endpoints: GET /api/mcp/status, POST /api/mcp/:name/reconnect
+- Add TUI gateway-api.ts functions for MCP
+- Add gateway slash commands: /mcp (with subcommands status, reconnect, servers)
+- Register in command manifest from gateway
+- Handle in TUI via gateway command forwarding (already works)
+
+### 4. File Reference in Chat (@file syntax)
+
+- TUI-side: detect @path/to/file in input, read file contents, inline into message
+- Add `/attach <path>` local command as alternative
+- gateway-api.ts helper not needed — this is purely client-side pre-processing
+- Modify InputBar or sendMessage to expand @file references before sending
+
+### 5. Implement /stop
+
+- Add `abort` event to ClientToServerEvents in @mosaic/types
+- TUI sends abort event on /stop command
+- Gateway chat handler aborts the Pi session prompt
+- Update use-socket to support abort
+- Wire /stop in app.tsx
+
+## Progress
+
+- [x] 1. Web search tools
+- [x] 2. File edit tool
+- [x] 3. MCP management commands
+- [x] 4. File reference in chat
+- [x] 5. Implement /stop
+
+## Risks
+
+- DuckDuckGo has no official API — need HTML scraping or use lite endpoint
+- SearXNG needs self-hosted instance
+- @file expansion could be large — need size limits
+- /stop requires Pi SDK abort support — need to check API

scripts/agent/orchestrator-daemon.sh

@@ -69,12 +69,12 @@ case "$cmd" in
       echo "[agent-framework] orchestrator already running (pid=$(cat "$PID_FILE"))"
       exit 0
     fi
-    nohup "$MOSAIC_HOME/bin/mosaic-orchestrator-drain" --poll-sec "$poll_sec" $sync_arg >"$LOG_FILE" 2>&1 &
+    nohup "$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-drain" --poll-sec "$poll_sec" $sync_arg >"$LOG_FILE" 2>&1 &
     echo "$!" > "$PID_FILE"
     echo "[agent-framework] orchestrator started (pid=$!, log=$LOG_FILE)"
     ;;
   drain)
-    exec "$MOSAIC_HOME/bin/mosaic-orchestrator-drain" --poll-sec "$poll_sec" $sync_arg
+    exec "$MOSAIC_HOME/tools/_scripts/mosaic-orchestrator-drain" --poll-sec "$poll_sec" $sync_arg
     ;;
   stop)
     if ! is_running; then

tools/install.sh

@@ -114,10 +114,10 @@ version_lt() {
 }
 
 framework_version() {
-  # Read VERSION from the installed mosaic launcher
+  # Read framework schema version stamp
-  local mosaic_bin="$MOSAIC_HOME/bin/mosaic"
+  local vf="$MOSAIC_HOME/.framework-version"
-  if [[ -f "$mosaic_bin" ]]; then
+  if [[ -f "$vf" ]]; then
-    grep -m1 '^VERSION=' "$mosaic_bin" 2>/dev/null | cut -d'"' -f2 || true
+    cat "$vf" 2>/dev/null || true
   fi
 }
 
@@ -145,7 +145,7 @@ if [[ "$FLAG_FRAMEWORK" == "true" ]]; then
 
   FRAMEWORK_CURRENT="$(framework_version)"
   HAS_FRAMEWORK=false
-  [[ -d "$MOSAIC_HOME/bin" ]] && [[ -f "$MOSAIC_HOME/bin/mosaic" ]] && HAS_FRAMEWORK=true
+  [[ -f "$MOSAIC_HOME/AGENTS.md" ]] || [[ -f "$MOSAIC_HOME/.framework-version" ]] && HAS_FRAMEWORK=true
 
   if [[ -n "$FRAMEWORK_CURRENT" ]]; then
     dim "  Installed: framework v${FRAMEWORK_CURRENT}"
@@ -202,13 +202,8 @@ if [[ "$FLAG_FRAMEWORK" == "true" ]]; then
     ok "Framework installed"
     echo ""
 
-    # Ensure framework bin is on PATH
+    # Framework bin is no longer needed on PATH — the npm CLI delegates
-    FRAMEWORK_BIN="$MOSAIC_HOME/bin"
+    # to mosaic-launch directly via its absolute path.
-    if [[ ":$PATH:" != *":$FRAMEWORK_BIN:"* ]]; then
-      warn "$FRAMEWORK_BIN is not on your PATH"
-      dim "  The 'mosaic' launcher lives here. Add to your shell rc:"
-      dim "  export PATH=\"$FRAMEWORK_BIN:\$PATH\""
-    fi
   fi
 fi
 
@@ -290,7 +285,6 @@ if [[ "$FLAG_CLI" == "true" ]]; then
     # PATH check for npm prefix
     if [[ ":$PATH:" != *":$PREFIX/bin:"* ]]; then
       warn "$PREFIX/bin is not on your PATH"
-      dim "  The 'mosaic' TUI/gateway CLI lives here (separate from the launcher)."
       dim "  Add to your shell rc:  export PATH=\"$PREFIX/bin:\$PATH\""
     fi
   fi
@@ -303,28 +297,9 @@ fi
 if [[ "$FLAG_CHECK" == "false" ]]; then
   step "Summary"
 
-  echo "  ${BOLD}Framework launcher:${RESET}  $MOSAIC_HOME/bin/mosaic"
+  echo "  ${BOLD}mosaic:${RESET}          $PREFIX/bin/mosaic"
-  echo "    ${DIM}mosaic claude, mosaic yolo claude, mosaic pi, mosaic doctor, …${RESET}"
+  dim "  Framework data:  $MOSAIC_HOME/"
   echo ""
-  echo "  ${BOLD}npm CLI (TUI):${RESET}       $PREFIX/bin/mosaic"
-  echo "    ${DIM}mosaic tui, mosaic login, mosaic wizard, mosaic update, …${RESET}"
-  echo ""
-
-  # Warn if there's a naming collision (both on PATH)
-  FRAMEWORK_BIN="$MOSAIC_HOME/bin"
-  if [[ ":$PATH:" == *":$FRAMEWORK_BIN:"* ]] && [[ ":$PATH:" == *":$PREFIX/bin:"* ]]; then
-    # Check which one wins
-    WHICH_MOSAIC="$(command -v mosaic 2>/dev/null || true)"
-    if [[ -n "$WHICH_MOSAIC" ]]; then
-      dim "  Active 'mosaic' binary: $WHICH_MOSAIC"
-      if [[ "$WHICH_MOSAIC" == "$FRAMEWORK_BIN/mosaic" ]]; then
-        dim "  (Framework launcher takes priority — this is correct)"
-      else
-        warn "npm CLI shadows the framework launcher!"
-        dim "  Ensure $FRAMEWORK_BIN appears BEFORE $PREFIX/bin in your PATH."
-      fi
-    fi
-  fi
 
   # First install guidance
   if [[ ! -f "$MOSAIC_HOME/SOUL.md" ]]; then