fix(update): re-seed framework on version drift, not just in-command updates (#642)

`mosaic update` only re-seeded ~/.config/mosaic when the @mosaicstack/mosaic
package was upgraded *within that same command*. When the CLI is upgraded
another way — a direct `npm i -g @mosaicstack/mosaic`, or an update run where
only sibling packages were outdated — the framework files (launchers, runtime
adapters, fleet tools) silently stayed stale, so shipped fixes never activated.
Critically, the "all packages up to date" branch returned before any re-seed
could run, so a drifted-but-current host had no path to reconcile.

Add framework drift detection: compare the on-disk schema version
(~/.config/mosaic/.framework-version) against the version bundled in the
installed package (FRAMEWORK_VERSION in the bundled install.sh). `mosaic update`
now re-seeds when the mosaic package updated OR the on-disk framework is older
than bundled — including from the up-to-date branch. Detection is conservative:
if either version can't be read it reports no drift, so a missing/unreadable
version file never triggers an unexpected re-seed. `--no-reseed` still opts out.

The re-seed + unit-refresh + relaunch sequence is factored into a single local
helper shared by both the post-update and drift paths (no behavior change to the
existing path beyond also firing on drift).

New exported, unit-tested helpers in update-checker.ts:
- readInstalledFrameworkVersion / readBundledFrameworkVersion
- checkFrameworkDrift -> { drifted, installed, bundled }

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

.gitignore

@@ -15,10 +15,3 @@ infra/step-ca/dev-password
 
 # Scratch dirs created by the framework git-wrapper shell test harnesses
 .mosaic-test-work/
-
-# Transient config files vite/vitest/esbuild write next to a *.config.ts while
-# loading it, then unlink. They are untracked but were not ignored, so turbo's
-# package traversal hashed them and intermittently failed CI with "Package
-# traversal error: ... .timestamp-*.mjs: No such file or directory" when the
-# file vanished mid-scan. Ignoring them removes the race.
-*.timestamp-*.mjs

eslint.config.mjs

@@ -28,7 +28,6 @@ export default tseslint.config(
             'apps/web/e2e/helpers/*.ts',
             'apps/web/playwright.config.ts',
             'apps/gateway/vitest.config.ts',
-            'packages/db/vitest.config.ts',
             'packages/storage/vitest.config.ts',
             'packages/mosaic/__tests__/*.ts',
             'tools/federation-harness/*.ts',

packages/db/vitest.config.ts

@@ -4,22 +4,5 @@ export default defineConfig({
   test: {
     globals: true,
     environment: 'node',
-    // The migration suite spins up a real PGlite (WASM Postgres) instance per
-    // test and applies the full drizzle migration set. Each case legitimately
-    // takes ~5s locally and considerably longer on CI, where turbo runs many
-    // packages' test suites concurrently. The 5s vitest default then expires
-    // mid-migration and the run fails as a phantom "Test timed out in 5000ms"
-    // (often surfacing the underlying WASM `memory access out of bounds` when
-    // the heap is starved). Give migrations real headroom.
-    testTimeout: 120_000,
-    hookTimeout: 120_000,
-    // Each PGlite instance carries a multi-hundred-MB WASM heap. Running test
-    // files in parallel forks multiplies that peak and is what tips the CI
-    // runner into the WASM OOM. A single fork keeps only one instance resident
-    // at a time — slightly slower, but deterministic.
-    pool: 'forks',
-    poolOptions: {
-      forks: { singleFork: true },
-    },
   },
 });

packages/mosaic/framework/tools/fleet/start-agent-session.sh

@@ -122,85 +122,6 @@ fi
 
 mkdir -p "$MOSAIC_AGENT_WORKDIR"
 
-# ── Pre-trust the workdir for the Claude runtime ─────────────────────────────
-# Claude Code shows a one-time "Is this a project you trust?" folder-trust gate
-# the first time it opens a directory. A fleet-launched agent has no human to
-# answer it, so the pane stalls forever at the prompt while its heartbeat keeps
-# reporting "healthy" (the pane process IS alive — it's just blocked).
-#
-# IMPORTANT: --dangerously-skip-permissions does NOT bypass this gate, and
-# neither does `trustedProjectDirectories` in settings.json (verified empirically
-# 2026-06-24). The ONLY thing the gate honors is the per-project record in
-# ~/.claude.json: projects["<dir>"].hasTrustDialogAccepted == true (exactly what
-# answering the prompt writes). So we pre-seed that record here.
-#
-# Idempotent, atomic, best-effort: any failure is non-fatal (the agent still
-# launches — worst case it stalls on the gate, i.e. the pre-fix status quo).
-# Only the claude runtime needs this; codex/pi have no such gate.
-_ensure_claude_workdir_trusted() {
-  local workdir="$1"
-  # The path claude keys on is the resolved cwd it is launched in.
-  local rp
-  rp=$(cd "$workdir" 2>/dev/null && pwd -P) || rp="$workdir"
-  # ~/.claude.json lives next to the claude config dir; honor CLAUDE_CONFIG_DIR.
-  local claude_json="${MOSAIC_CLAUDE_JSON:-${CLAUDE_CONFIG_DIR:+$CLAUDE_CONFIG_DIR/.claude.json}}"
-  claude_json="${claude_json:-$HOME/.claude.json}"
-
-  if ! command -v python3 >/dev/null 2>&1; then
-    echo "WARNING: python3 not found; cannot pre-trust '$rp' for claude (agent may stall on the folder-trust gate)" >&2
-    return 1
-  fi
-
-  # Serialize concurrent agent launches that share ~/.claude.json (flock if available).
-  local lock="${claude_json}.mosaic-lock"
-  _seed() {
-    MOSAIC_CJ="$claude_json" MOSAIC_TRUST_DIR="$rp" python3 - <<'PY'
-import json, os, sys, tempfile
-cj = os.environ["MOSAIC_CJ"]
-d = os.environ["MOSAIC_TRUST_DIR"]
-try:
-    data = json.load(open(cj)) if os.path.exists(cj) else {}
-    if not isinstance(data, dict):
-        data = {}
-except Exception:
-    # Never corrupt an unreadable/partial file — bail without writing.
-    sys.exit(2)
-projects = data.setdefault("projects", {})
-entry = projects.get(d)
-if not isinstance(entry, dict):
-    entry = {}
-    projects[d] = entry
-if entry.get("hasTrustDialogAccepted") is True:
-    sys.exit(0)  # already trusted — nothing to do
-entry["hasTrustDialogAccepted"] = True
-tmp_dir = os.path.dirname(cj) or "."
-fd, tmp = tempfile.mkstemp(dir=tmp_dir, prefix=".claude.json.mosaic.")
-try:
-    with os.fdopen(fd, "w") as f:
-        json.dump(data, f, indent=2)
-    os.replace(tmp, cj)  # atomic
-except Exception:
-    try:
-        os.unlink(tmp)
-    except OSError:
-        pass
-    sys.exit(3)
-PY
-  }
-  if command -v flock >/dev/null 2>&1; then
-    ( flock 9; _seed ) 9>"$lock" 2>/dev/null || _seed
-  else
-    _seed
-  fi
-}
-
-case "$MOSAIC_AGENT_RUNTIME" in
-  claude)
-    _ensure_claude_workdir_trusted "$MOSAIC_AGENT_WORKDIR" \
-      || echo "WARNING: could not pre-trust workdir for claude agent $AGENT_NAME" >&2
-    ;;
-esac
-
 # ── Launch the tmux session (no exec — we continue to wire the heartbeat) ────
 _tmux new-session -d -s "$AGENT_NAME" -c "$MOSAIC_AGENT_WORKDIR" \
   bash -c "$PANE_SHELL_SNIPPET"

packages/mosaic/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mosaicstack/mosaic",
-  "version": "0.0.42",
+  "version": "0.0.41",
   "repository": {
     "type": "git",
     "url": "https://git.mosaicstack.dev/mosaicstack/stack.git",